RNA id: AMCG00014234


Basic Information

Item Value
RNA id AMCG00014234
length 834
RNA type mRNA
GC content 0.70
exon number 4
gene id AMCG00014234
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 5896567 ~ 5906253 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGTGCCCATGTCTCTCCCGACAGATACCTGGCCATGTACGCCTACAAGCCTCAGAAGACGGATGAGCTGGAGCTGCGCAAGGGCGAGATGTACCGCGTGACGGAGAAGTGCCAGGATGGCTGGTTCAAGGGCACGTCCCTGCGCTCCGGCACGTCTGGCGTCTTCCCCGGCAACTACGTCACCCCCGTGTCCAGGGCTCCCTTCGCGGTGGGTCAGCCCCGTGCCAGTCTGCCCAGTTCGGCCCAGGCGGTCAAGGGAGTGCCGAGTTCGCCCCAGTCGGCCGGCCCGTCCAGTCCGGTCCTCCTGGGCTCGGCGTCGCGCTCCTGCCCTCCTCTCATTGCTGGGGCGCCCTCCTCCTCCCCGCAGCTGCAGCCGGCCTCCGTGCACCTCAAGAACTGCCTTCGCATCTCGGGCCAGCAGACGGTGAACCAGGCCCGCAGCGCCATGCAGTTGGTGCACAGCCCTCCCGCCTCCGACCGTCCCACGGCGACGGTCCCCCCACTGCGCACTCAGAGCTCACCCTCCCGCTCCCCGGCCACGGTGGTGCGGCCCCTCTCCATGGTGTCCCCCCAGCATGCTTCCTCCTCGCCCCCTGCCATGGCCCTGTCCGGGGGTCCCGGCACCCGCCCCGCCATCCCGCTCACCTCGGCCGCCGCCGCCATCACCCCTCCCAACGTCAGCGCCGCCCACCTCAACGGAGAGGCAGCCCTGGGCCCCCTGCATTCCCACTTGGCCGCCCTGCCCCCGGGGGCCTCCGCCAGCCTGGCCAAAGCAGAGGAGAAGAAGGCGGAGAAGGTGTCCTCAGATGGACTCGGGTTGTCATCACCAGTGTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85711 lncRNA downstream 70638 5825504 ~ 5825929 (-) True G68595
TU85704 lncRNA downstream 114175 5779485 ~ 5782392 (-) True G68590
TU85691 lncRNA downstream 186487 5709818 ~ 5710080 (-) True G68581
TU85674 lncRNA downstream 192640 5657305 ~ 5703927 (-) True G68572
TU85835 lncRNA upstream 147858 6054111 ~ 6056331 (-) True G68680
TU85822 lncRNA upstream 153243 6059496 ~ 6062496 (-) False AMCG00014241
TU85837 lncRNA upstream 166918 6073171 ~ 6075910 (-) False AMCG00014241
TU85829 lncRNA upstream 200786 6107039 ~ 6108358 (-) False AMCG00014241
TU85889 lncRNA upstream 628227 6534480 ~ 6534701 (-) True G68722
AMCG00014236 mRNA downstream 2621 5893211 ~ 5893946 (-) True AMCG00014236
AMCG00014233 mRNA downstream 5316 5886471 ~ 5891251 (-) True AMCG00014233
AMCG00014232 mRNA downstream 30043 5864356 ~ 5866524 (-) True AMCG00014232
AMCG00014230 mRNA downstream 45645 5846288 ~ 5850922 (-) True AMCG00014230
AMCG00014231 mRNA downstream 53352 5826759 ~ 5843215 (-) True AMCG00014231
AMCG00014235 mRNA upstream 1889 5908142 ~ 5911400 (-) True AMCG00014235
AMCG00014238 mRNA upstream 97384 6003637 ~ 6004228 (-) True AMCG00014238
AMCG00014241 mRNA upstream 153236 6059489 ~ 6081877 (-) True AMCG00014241
AMCG00014240 mRNA upstream 177134 6083387 ~ 6104883 (-) True AMCG00014240
AMCG00014242 mRNA upstream 203106 6109359 ~ 6124346 (-) True AMCG00014242
TU85055 other downstream 3067423 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3252660 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3353870 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 3978385 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 3993952 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1471835 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1511345 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 2231078 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 2249976 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2477032 8383285 ~ 8384224 (-) True G69156

Expression Profile