RNA id: AMCG00014244


Basic Information

Item Value
RNA id AMCG00014244
length 1770
RNA type mRNA
GC content 0.58
exon number 8
gene id AMCG00014244
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6205928 ~ 6212795 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCTATCCATGTGGAAGGGCTGGTGGCCATCGTTATCTTCTACCTGCTCATCCTGATCGTGGGGATATGGGCTGCGTGGAAGAACAAAAACTCGGGGGTGTCGGAAGGGACGGACCGCAGCGAGACCATCATGGTCGGCGGCAGAGATATCGGATTGTTTGTGGGTGGATTCACTATGACCGCGACCTGGGTTGGCGGCGGCTACATCAACGGCACCGCTGAGTACGTCTATCTGCCGGGATACGGGCTGGCCTGGGCGCAGGCTCCCTTCGGATACGCGCTCAGCCTGGTTGTAGGTGGGCTGTTCTTTGCTAAGCCCATGCGCTCCAAGGGCTACGTCACCATGCTGGACCCCTTCCAGCAGCTGTACGGCAAGAGGATGGGCGGCCTGCTCTTCATCCCGGCGCTCATGGGCGAGATCTTCTGGTCGGCGGCCATCCTCTCGGCCCTGGGTGCAACTCTGAGCGTCATCGTGGATATCAACATCAACATGTCCGTCGTCATCTCCGCGCTCATAGCCATCTTCTACACGCTGGTGGGGGGGCTCTACTCCGTGGCCTACACCGACGTGGTGCAGCTCTTCTGTATCTTCTTGGGACTGTGGGTCAGTGTGCCTTTCGCCATGTCAAACCCAGCTGTGTCTGACATCGGGGTCACGGCCGTGAAGAATGTCTACCAGGAGCCCTGGCTGGGGTCCATCGAGTCGTCCGATGTCTGGAATTGGATGGATAACTTCTTTCTACTGATGTTAGGGGGGATTCCCTGGCAGGTGTATTTTCAACGGGTTCTTTCTGCTTCTTCAGCTACTTACGCCCAAGTCCTCTCCTTCCTCGCTGCGTTTGGCTGCCTAGTCATGGCGGTGCCATCGGTCCTGATAGGGGCAATAGGGGCTTCAACAGACTGGAACCAGACCTCCTACGGGGAGGTCCAGCCCATGCAGAAAGAGGAATCGGACATGATACTGCCCATAGTGCTGCAGCACTTGTGTCCGCCCTACATCTCCTTCTTTGGTCTGGGGGCGGTGTCGGCCGCAGTGATGTCATCTGCGGACTCCTCCATCCTGTCGGCCAGCTCCATGTTCGCCCGGAACATCTACCAGCTCGCTTTCCGCCAAACGGCCTCCGACAGGGAGATCGTGTGGGTCATGAGGATCAGCATCTTCGTGTTCGGTGCATTGGCCACGGCCATGGCTCTGCTGACGGGCACCGTGTACGGCCTGTGGTACCTGAGCTCAGACCTGGTCTACGTCATCATCTTCCCGCAGCTCATCAGCGTGCTGTTCGTCAAGGGCACCAACACCTACGGCTCGGTGGCGGGGTACATCTTCGGCCTGGTCCTCAGGATTGGCGGGGGCGAACCGTACCTCAAACTGCCTCCATTCATCTATTACCCGGGCTGGCATGAAGTGAAGAAGGAGCACCCGCTGACGGGGGCGGTAGAGTACATCATCGTGCAGAAATTCCCTTTCAAGACAATGTCCATGCTCTCGTCCTTCCTGGGGAACGTGGCCTTCTCCTATCTGATGAAGTACCTCTTCGAGAGCGGCACCCTCTCGCCCAAATATGACTTCCTGGAGGCCGTGCTGGCGAGGCACAGTAAGGAGAACATGGACAAGACCACGCTGGTGAACAATGACAACATTGTACTGTCGGAGATGGTGCCCGTGAAGCCCAGGCTCAGCACCACAATGGCGGGGACGTTCACCAACAGAGAGGCGCTGAGCGACGACGACACGAGCCCAGACACCTCCAATAACGAGAATGACTAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005215 transporter activity molecular_function

KEGG:

id description
K14387 SLC5A7, CHT1; solute carrier family 5 (high affinity choline transporter), member 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85829 lncRNA downstream 97570 6107039 ~ 6108358 (-) False AMCG00014241
TU85837 lncRNA downstream 130018 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 143432 6059496 ~ 6062496 (-) False AMCG00014241
TU85835 lncRNA downstream 149597 6054111 ~ 6056331 (-) True G68680
TU85711 lncRNA downstream 379999 5825504 ~ 5825929 (-) True G68595
TU85889 lncRNA upstream 321685 6534480 ~ 6534701 (-) True G68722
TU85891 lncRNA upstream 467230 6680025 ~ 6680288 (-) True G68724
TU85931 lncRNA upstream 777808 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 831330 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 841136 7053931 ~ 7054306 (-) True G68773
AMCG00014239 mRNA downstream 42171 6145608 ~ 6163757 (-) True AMCG00014239
AMCG00014242 mRNA downstream 81582 6109359 ~ 6124346 (-) True AMCG00014242
AMCG00014240 mRNA downstream 101045 6083387 ~ 6104883 (-) True AMCG00014240
AMCG00014241 mRNA downstream 124051 6059489 ~ 6081877 (-) True AMCG00014241
AMCG00014238 mRNA downstream 201700 6003637 ~ 6004228 (-) True AMCG00014238
AMCG00014246 mRNA upstream 8202 6220997 ~ 6222712 (-) True AMCG00014246
AMCG00014249 mRNA upstream 13906 6226701 ~ 6228443 (-) True AMCG00014249
AMCG00014247 mRNA upstream 28183 6240978 ~ 6247042 (-) True AMCG00014247
AMCG00014245 mRNA upstream 39576 6252371 ~ 6253881 (-) True AMCG00014245
AMCG00014248 mRNA upstream 51155 6263950 ~ 6275500 (-) True AMCG00014248
TU85055 other downstream 3376784 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3562021 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3663231 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4287746 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4303313 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1165293 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1204803 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 1924536 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 1943434 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2170490 8383285 ~ 8384224 (-) True G69156

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000212_00396779_00403494.mRNA True 3846 mRNA 0.49 9 CI01000212 394886 ~ 403494 (-)