RNA id: AMCG00014248


Basic Information

Item Value
RNA id AMCG00014248
length 1239
RNA type mRNA
GC content 0.60
exon number 7
gene id AMCG00014248
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6263950 ~ 6275500 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTATGCCCACGGGTGCCCTGCTCGGAAGGGATCGTCCAGGCAGCATCCCGGTGTCAGTGGTACATCAAAGCCAAGATGAAGTCCGAAGAGAAGAGGGGGACCCAGTTTCAGAACGGACACATCCGCTTCCCGGGGATCAAAACGTACGTGGACCCCGACACCTACGAGGACCCCACACAGGCCGTGCACGAGTTCGCCAAGGAGATCGACCCGTCGCGCATCCGCATCGAGAGGGTGATCGGAGCAGGCGAGTTCGGGGAGGTGTGCAGCGGCCGTCTGCGGACCCCGGGGAAGAGAGAGATCCCGGTGGCCATTAAGACGCTGAAGGGAGGCTACGTGGAGCGACAGCGGAGGGACTTCCTGAGGGAGGCCAGCATCATGGGCCAGTTCGACCACCCCAACATCATCCGGCTGGAGGGCGTGGTCACCAAAAGTAAGCACGCCCCCTGGTGTGAGTCTCGTGTGTGTCAGGGTGCTCTTCCGGGAACGCGGCCGAGTCCTTGGCGGAGACCTTCTCTAACGGCTTTCTCTTCTGTCCTGGCAGGCCGGCCGGTGATGATCGTGGTGGAATACATGGAGAACGGCTCTCTGGACTCCTTCCTCAGGAAGCACGACGGGCACTTCACGGTGATCCAGCTGGTGGGCATGCTGCGGGGCATCGCCTCGGGGATGAAGTACCTCTCGGACATGGGCTACGTCCACCGGGATCTGGCCGCCCGCAACATCCTGGTCAACAGCAACCTGGTGTGCAAGGTGTCGGACTTCGGGCTGTCGCGCGTGCTGGAGGACGACCCCGAGGCTGCCTACACGACCACCCTGAAGTGGAACGGGAGTTTGGTGTGCTGTGCCAGTGCTATGATTCTGTGTGGTTCGGTAAAGAATGACAGCCTACCGCTTCCTCTTGGCCGTGTTCAGTGTTATCCGCAATCCCGCATTGCTCGACAGAAAATAAGATGCAACTCTCCTAATCCAGCCAAGACCCCCGTGACCTATTTTCTCTTGGCTGCTGTTGGAGGGATATATTGCCTTTCTGGGCCTGTGTGCCGAAAGAAAGCCATTTTCTGCATGACAGCAAATCTCCACACGCAGGAGGCCCCGGAAAGCTTTACTACAGCAAGATTACGCGTGGAGGCCGCCTGTGGAATCCTGATTTGGCCCTCCACTCGTGTGGGGAGAATCGCCCCTGCGCAGCGCGACAGCGAGTCGGGGATGAGAAAACCCCCGTGCCGGCTCTGA

Function

GO: NA

KEGG:

id description
K05107 EPHA6, EHK2; Eph receptor A6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85829 lncRNA downstream 155592 6107039 ~ 6108358 (-) False AMCG00014241
TU85837 lncRNA downstream 188040 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 201454 6059496 ~ 6062496 (-) False AMCG00014241
TU85835 lncRNA downstream 207619 6054111 ~ 6056331 (-) True G68680
TU85711 lncRNA downstream 438021 5825504 ~ 5825929 (-) True G68595
TU85889 lncRNA upstream 258980 6534480 ~ 6534701 (-) True G68722
TU85891 lncRNA upstream 404525 6680025 ~ 6680288 (-) True G68724
TU85931 lncRNA upstream 715103 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 768625 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 778431 7053931 ~ 7054306 (-) True G68773
AMCG00014245 mRNA downstream 10069 6252371 ~ 6253881 (-) True AMCG00014245
AMCG00014247 mRNA downstream 16908 6240978 ~ 6247042 (-) True AMCG00014247
AMCG00014249 mRNA downstream 35507 6226701 ~ 6228443 (-) True AMCG00014249
AMCG00014246 mRNA downstream 41238 6220997 ~ 6222712 (-) True AMCG00014246
AMCG00014244 mRNA downstream 51155 6205928 ~ 6212795 (-) True AMCG00014244
AMCG00014251 mRNA upstream 9840 6285340 ~ 6302746 (-) True AMCG00014251
AMCG00014250 mRNA upstream 59015 6334515 ~ 6340409 (-) True AMCG00014250
AMCG00014252 mRNA upstream 123968 6399468 ~ 6414836 (-) True AMCG00014252
AMCG00014255 mRNA upstream 434719 6710219 ~ 6717932 (-) True AMCG00014255
AMCG00014254 mRNA upstream 442819 6718319 ~ 6739267 (-) True AMCG00014254
TU85055 other downstream 3434806 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 3620043 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 3721253 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4345768 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4361335 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 1102588 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 1142098 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 1861831 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 1880729 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 2107785 8383285 ~ 8384224 (-) True G69156

Expression Profile