RNA id: AMCG00014254


Basic Information

Item Value
RNA id AMCG00014254
length 6082
RNA type mRNA
GC content 0.48
exon number 9
gene id AMCG00014254
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6718319 ~ 6739267 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCAGGACTGTAATCTCCAGCTGCGGCTCCAAATGGCGAGAGGAGGTGTGGGCTGCCTCGGggaaacaaaccaataaaaaacttaacatgcatttaaaaaactgactatcatattttaattggctgaaatgcatatttgtatCAAGGCAAATATGGAATTTGAATGAAGACAATTATGTAACAGTAATTCTATTCTTTAGtgatataatataaaaacaaaccagcaatCTAGCAACAATCACCTAAAAGTACATTTCGTAATGAGTGGGACAGGGCTTTAATCCATTCCTACAATACAGCAGGGCCAGATCTCTGCTGgtgttttcatttgctttacAAGAGAGAGTGTTATTCATATAATTACAGCTGCTCTACCAGACAGACCTTTTTAGATAAGGGGTTCATTAATGCAAGGCTTGACCTGGTAATTAAACAGGATTATTACAGCGAGGGTTCAGTTTGTTTAACAgagttattgtgttttgtttttggcccAGGCTGAGAGAGGGCCTCACTGGGATTGCCTGCGTTCCTGAGATGGTGTAAATAGgcttgtatgtttgtatataggCTATGTGTGTATTCATACAACCTAACAGTGTTACTTGCAGTCAGAGGTGTAACGGggatatgtttaaataaagactAATTTCCCTGATCCTTCAATTAGACGTGAAAGGTACTTTCCAGAAAGCAACAGTGTTTCTATATCAGGACGGTCGTATTAAGTCCTCCGTCCGGCCCATGTGTGAGCGCAGCTCTAAGTCACAAGGACGAGGAGCAAATCCCCGCCAATCCGTGTGTCACCGGGCCCGGGGGGGGCTGGGCAGGGCGGTGCCAGCAGGTCTTCTGTCGTCAGTCGGTCGCTGTccggccacagacctgctgctCATGAAGCCATCCTGGTTCCAGAGGACCGTCCACCAGATCGTGCTTCTGATGTCCCTGAAGCGGAAATGCCGTAGTTAAGTACCTGCCTGCCAGTGCTCTGTGGTTCAGTGGTTCAGTGTCTCCAAGAAAGAAAGGCTGTTTGGTGCACTTTCTGAAGCTGGGCAGAAGACATGGATCACTCTTTAGTCGTCTGtgcacttttttaattgtgaaactTGACCACTGTTTGGTCGCCCTACTGTGTGATCGAACTGGTGAACTGATTTTCAAAGTGCTGTTCTTCCAGGTGCTTTATGGTTATTGCGGTGCAGTTATCTCATTGTTCCTGCAGGGGCCACCTTCATGTGTTTGAGGAATCCTGCGGTGAACAGCCCCAAAATGAGGGTTCGGCTAAATCAGCTGGCATGAAACTTGCATTATAGcgttaattaattcattaattgactTAATTGATATTGTACTCCAATCATCTTGGCTTTGTTTGAACACAGATTCTGCATGCATACTCCTCTTGTATAACTGCAGTGTAAACAAATAGACCAGCTGTACAAGATAGCTGGATTATAACTGAAAGTAGAGTGTAAAGACAGGCTTTGAATCTTGTACAGTACAGGTACTGGTTAACGTGTGCTAAAAATACTGGACTTCATTATGCATTGAGATGTTCTTCACTCTAACGAGTTGTATTCTTTCTGAAAAGAGAGAGTGGCAACCTAAGCAATTTTGACGAGGGGAACAAATGGTTTAAAACTATGTATGCATTGTGTCTGTAATCCTGCAGATTTTCCCAGATTTATTTCTGCTGCACTGCAAGTGCTGCCGATCCTGTCTCGACAGGTTTTCCTTTGTGTCATTGCCAGGACTGTGGGAACAACATACCACTTAGATTTGTCTGGCCATGCTGTTTGACCATACTTACCTTGAGAGATACTTAGCCTTAGAGACATCTCTTCGTCAAGTAACAGCAGAGTTACAGTTGTTTACAGTACCACCATTTCAGTGTCATATCAGATGATCAATCAAGGGTAAAATCACTAATCAATCTCAGTTAAATTCAATTCATTCCTGTGTTGGTTGCATCTATAGATGTGTTTAGACAGAACTAGCCGTGCCATTTAATCCTGTACAGATCCCCTTCCAGCTTAATCATATAGATACAGCGAAAGTGTGTTGAGGTGCCTTTCTGACACTAATACAGCCGCCCACAATAGCAGTCTTCTACAGGAGgagaaatgtgtgtctgtgtaaccCTGCAgctgtattgtatatttgttttatactaaACAGGCTCTCACACCAAACAAACCACAGAGATGTTGATGCGTCAATGTGTTGATAATTTAAGAAGGATCCTGTTTCTTTAGCCTTAATATGAACCCAGAAATTCCCCAAAGGAGATTCAGTTCAAGGCATAAGCCCTGACATATATGTTTGTCTGTGTAACATGTATGCTCTGTGGTCCAGGGCCAAGGAGGCTCACAGCTGCAGGTGATTGATTAGCCCCCCGGCAGAAAGCTGTGCCAGTGACCTGGGTATGCTCCCTGCCCAGGCTGCCCTCGCGCCACAGTGTGGCGTTTAGTCAAACTCTTTGGGTCATACAGACGGTTCTAGAAAGGCAGTGTTATGTGTATTAAAGGTGTTGCAATAATACTTGTCAGTTACTGTGAGAAGTAGATGCCATCTTTAATCATAGAACAGTATGTCCTCGCACTCCATCTCTGTGTCGAGGCGAGCGTGTGcttgtgtttgtactgtttgGGCACTGAACCCCATCCACACCAATGTAAACGTGCAAACGAATCTGTTCAGCCCTAGACATGCAGAGTTCACTTGCTCATGTTCCCAAAAGTCATCGAATGCGTCTCTCATTTCAGAAAAGTGACCTTGGTGATGGTGGGACTCGACAACGCTGGAAAAACGGCGACGGTGAGAGGCATTCAGGGAGaAAATCCTGAGGACGTGGCCCCCACCGTGGGCTTCTCCAAGATCGACCTGAAGCAGGGCAAGTTCGAGGTGACCATCTTCGACCTGGGCGGGGGCAAGCGGATCCGGGGCATCTGGAAGAACTACTACTCGGAGTCGTACGGCGTGGTGTTCGTGGTGGACTCGAGCGACGTGGAGCGCATCCAGGAGACCAAGGAGACCATGGCCGAGGTCCTGAGACACCCGCGCATCGCCGGGAAGCCTGTGCTCGTGCTGGCCAATAAACAGGACTGCGACGGGGCCTTGGCCGAGGCAGACATCATCGAGTATCTCTCTCTGGAGAAGCTGGTGAACGAGAACAAGTGTCTGTGTCAGATTGAGCCGTGCTCGGCCGTGATTGGCTACGGCAAGAAACTGGACAAGTCCATCAAGAAGGGGCTGGCCTGGCTGCTGAGCAACATCGCCAAGGACTACGAGGCCTTAAATGAGCGCGTGCAGAAGGACACGGCCGAGCAGAGGGCGCTGGAGGAGCAGGAGAAGCGTGAGAGGGCGGAGCGCagagagagggaggaggcagAGCGAGAGGGGAGGCCCGTGCCAGAAGAGgacgaggaggcggaggaggatgGCACCGTGTCGAACCCTTTTCAGCCCATCACTGACGTCATCACTGAGAACGAGGACAAGCGccggagagagaaggagaggaagccGCGGGCCGAGGCGCTGCCCCTGGCGCCGGGCCGGGTGGAGGACGCGGACGCGGAGAGCGCCGCCGTGCTGGACGACTACAGCGCCGCTCTGAGCCGGCAGCTGCGGCAcgagcaggaggaagaggagggggaggaggaggaggaggagagcgagaGGCAGACCCCCGACAGCACGGACTCAGAGCGCGCCAAGAAGAAGACCAAGAAGCTGCGACTGAGGCGGAAGAACCGCGTCGACCCGCTGAGGACGGACGAAACCGCGGCCGAGAGCCCCACGCCACCGCCTCCCCCCGttggatGGGGAACCCCCAAAGTCACTAGGCTTCCCAAACTCGAGCCGCTGGGGGATTCGAGGCGTTCTGATTTCTATGGCAAACCCCTCCCTCCTGTCACCGTTAGGCAGAGACCTAACAGTGACGCCCACGATGTCATCTCCTAGCTCCCCTCCGCTCGGCCTTCTGTTCCCCGACAGTCACTCCTGTCTTGTTTCGCTCGGGCCGTGCGGACGGACACGCGCGCCTCGGCCGGACCCCCGCGGGGCAAGCCACGGCGCCCGTCCGGAGCGCGGAGAGGCTGAGGGTGCGACTGCGGGCGGACAGGCGCACGGGAGGAGAATCTTTCCTTTTATCCGAGGATGAACACGATTAACTCTTCCTCAGCGatgattatatacatacacgCATCTCTCTCCAATTGATGGTGAACTTATTCCCAAATTGGACTTGATTCACTTCTATTTTTCTATGATGTCTTGAGCAGGAAGGGACTGTTTAAAGACTCGAGCTCTTCCGTTTTGCAGGACTCCGCTTGTATCTTCTGGACTCTAGCTACACAGGAGACACTATACCTTGGGACcgtgattttattttgattttatacgGCTTTGAATCAGTATTTATACAGCCTTTCCGAGGGGATTCTCCCGGCCCCTCTCTCTTTTGTACTCTGTGAAGAGGGTCTGTTTACGATGGGCTTTGTTTTGTGCGCCGGTTCCTTCGTGGACACGACCTCTCTCCCCGAGAGACGCGTCCGAGTGCCGGTTCCTCCGATCGCCGAGAAGGACGCGGCCGGAGCGATTGATCTGCCTTGAGGAGAAGATACAGTAGAATATGAACCAATACGCAGATTTGGTTATTCACGTTGGCATCTAAATTGTTAGAAAGGGATCAAATGGCTTGTGAATCCGAGGAGCGCGGTGTTAGACGTGCGTTCACAGGACCGCTGCTTTCTGAAACTTTTATTAttctacttatttttattttttacttgctTTTGTACacgaatctttttttttttttttaaagttccaTGTCTTGTTCGTGTCTGTGCTCCAAAAATTGGTACAAAGGAAAAAAGGGTACGAAACAGCTGTCGATGACCGAGATGTCGAAATTGTCACCCTAGAGCTGAATTTAATCGAGCTGAAATTAATCAGTGATTCATAACCTGTAAATCAGACACAGCACTATATCTCCTGGGTGTCACTGTGTCCCGTTGTGTGAATCAGCATCAAAGTCAACAATAATCAACAAGGTAGATAGTGCTGCTTttcagagaaatatatataacttgAATCTAAAGACCAAGTTAGGAAAGATGTGTTATTACaattgtgttattaataatgtttccCACTGCACACATCAACAACCAGCAAGATCTTTCTCAAATTCCACCATCATTTCTTTATCTGCTCTTTTGATAGCATCTTGGGAACGCAGGGTGCcagaacaaaaatgtgtgtgtgtgtgtgtgcgtgtgtgtcgtgaaaataaaaacaagcacaaaaccGATTTCAAAGTCGTGTTAAACCAGCACAACGATCCGACGCTGACCCGTCGAGCCGAGATATTCTGGAGTGTGTTTGTATTCGCCATTAAAAATATCTCAATCCAACTGTACGTGATGGTGAAACATGTCCTTTCCTTTCTGAAGACGTGCTTCACAGGAACACAGGACCTGGACAGCTTGTGAGCAGATCACTCTGAAGCTCTTCTGTAGTGAAAAGTTGGGTAAATGTTTAACTGTGGAGGCAGAAGTGTTGTCACCCGTCAcacccctgtctgtctgtctgtcagtgtgtgccAATGAAACGCAAAACCAGAAACTGTTCCATTAAACATCTAAGGCTTGAAGAACTAAATGCGTTTGTGATTGTGTAAGGCTTTAATAATCCACCGCTGGGCACATGGCTGATACTGAATTTGTTGCGTTTTGTTTTGATATCCTGATGATGTAAAGggtttaaattaaagtatatatacGATTGCTTTATCCCGGATTGTATTCCAGAAATGCAATGGTGGGTGTTTATTCGTGAGGGAAAGGTAGGACTTTCTTGCTGCACGCCTGTAATTCTTCAACCACACTTTGATACAAGTGACtgatgtgctttgtgtttttgttaacaTGCTTAAAGAACACATGCTTCAGATTGTAACTCATGCCGTGATACTTATATTCATTTGTGTATGCTtgaagtggaaaaaaacaactgctgcATACGATGACACTGTTAattatttgctgttttgaaTACAATCACGTTTTGCTTA

Function

GO:

id name namespace
GO:0005929 cilium cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K07962 ARL13B, ARL2L1; ADP-ribosylation factor-like protein 13B

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85891 lncRNA downstream 38031 6680025 ~ 6680288 (-) True G68724
TU85889 lncRNA downstream 183618 6534480 ~ 6534701 (-) True G68722
TU85829 lncRNA downstream 609961 6107039 ~ 6108358 (-) False AMCG00014241
TU85837 lncRNA downstream 642409 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 655823 6059496 ~ 6062496 (-) False AMCG00014241
TU85931 lncRNA upstream 251336 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 304858 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 314664 7053931 ~ 7054306 (-) True G68773
TU85950 lncRNA upstream 315510 7054777 ~ 7058319 (-) True G68774
TU86010 lncRNA upstream 548796 7288063 ~ 7288335 (-) True G68826
AMCG00014255 mRNA downstream 387 6710219 ~ 6717932 (-) True AMCG00014255
AMCG00014252 mRNA downstream 303483 6399468 ~ 6414836 (-) True AMCG00014252
AMCG00014250 mRNA downstream 377910 6334515 ~ 6340409 (-) True AMCG00014250
AMCG00014251 mRNA downstream 415573 6285340 ~ 6302746 (-) True AMCG00014251
AMCG00014248 mRNA downstream 442819 6263950 ~ 6275500 (-) True AMCG00014248
AMCG00014256 mRNA upstream 13592 6752859 ~ 6755633 (-) True AMCG00014256
AMCG00014257 mRNA upstream 74914 6814181 ~ 6860542 (-) True AMCG00014257
AMCG00014258 mRNA upstream 147759 6887026 ~ 6888090 (-) True AMCG00014258
AMCG00014263 mRNA upstream 301464 7040731 ~ 7042716 (-) True AMCG00014263
AMCG00014264 mRNA upstream 322454 7061721 ~ 7061978 (-) True AMCG00014264
TU85055 other downstream 3889175 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4074412 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4175622 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4800137 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4815704 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 638821 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 678331 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 1398064 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 1416962 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1644018 8383285 ~ 8384224 (-) True G69156

Expression Profile