RNA id: AMCG00014255


Basic Information

Item Value
RNA id AMCG00014255
length 1200
RNA type mRNA
GC content 0.72
exon number 6
gene id AMCG00014255
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6710219 ~ 6717932 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTCTCCGCCGTCTGCGCCCGAGGAGGGGGCCACGCGCCGCACGTGCCACGGGGGGCGGCTCGGCGTCTGCACGCGCAGGTGAGGACGCAGCGACTTCCGGGTTCGGCTGCCCGGGGTCCGCACACGTGGTCGCGTGTCTGCGGGACTGGGTCCGAGGCGCACCGGGCAACAATGACACATCGCCCACGCCATGCGGGCAGCGCTGTGCTGCGATCGCGCTGCTTAACGGCCGTCTCTCGCCGTCTCGCGCAGCGCGGCCCGGGCCAGAGGCGGCTGTGTGAGCCGGTGCTGCAGCTCTTCGACCGGCAGTACTCGGAGGAGCTCGGGCCGCTCTGGACCACCGCCAGGGAGGTGCTGTGCCAGCCCCAGTGCTGGCAGTACGCCGTCATGCTGAACCGCTTCTGTGCGTCGGCCGAGCTGCAGCCGCGCCTCCGGGCCCTGGGCTACTCCGGCCTCCTGCCCCCGGCCTCCAGCCCCCTGCGGTGCTTCGTGCACCCGGCCCCCCTACGCCTGCCCTCCCAGCGGCACCGGCCCGGCCAGCTCAAGCCCTACTTCCTGCTCAACGCCGCCTCCCTGCTGCCCGTGCTGGCGCTGGGCGCGGCGGACGGGGAGTCGGTGCTGGACCTGTGCTCGGCCCCGGGCGGCAAAGCGGTGGCCGTCATGCAGAGCGCCACCCCAGGTCTGTTACTTTGCAACGAGTGGGACGGGCGGCGCTGGAAGTGGCTGGCGGAGACTCTCGAGTCCTTCATCCCGGCGCGCTTCAGCCACGCCGTCCAGGTGTCTAACCGAGATGGACGCGTCTTTGGGCGGATCGCAGAGGGCCTGTATGACAAGGTGCTGGTGGACGCCCCGTGCTCCAACGACCGCAGCTGGCTGTTCTGCCCCGGGCCGGACCGGGGCGCCGAGAGGATACGGGGGCGGGAGGCGCTGCCCGAGCTGCAGACACAGCTCCTCAGGCCCGGGGGCGCGCTCGTCTACTCCACCTGCACTCTGTCCCGCGCGGAGAACGGCGCCGTGGTGGAGGCGCTGCTGCGCTCCTGCCCCTCGCTGCAGCTGGAGGACCTGGGCGGGCTGGCAGACTCCCTGGCGCAACACTTCACCTTCGCACCCCCTGCCGGCCCTGGCCTGCTCGTGGTCCCCGACGCCGGCCGGACCTGGGGGCCCATGTTTGTGGCGAAGATGAGGAAGCTCCACTGA

Function

GO: NA

KEGG:

id description
K21969 NSUN3; tRNA (cytosine34-C5)-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85891 lncRNA downstream 29931 6680025 ~ 6680288 (-) True G68724
TU85889 lncRNA downstream 175518 6534480 ~ 6534701 (-) True G68722
TU85829 lncRNA downstream 601861 6107039 ~ 6108358 (-) False AMCG00014241
TU85837 lncRNA downstream 634309 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 647723 6059496 ~ 6062496 (-) False AMCG00014241
TU85931 lncRNA upstream 272671 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 326193 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 335999 7053931 ~ 7054306 (-) True G68773
TU85950 lncRNA upstream 336845 7054777 ~ 7058319 (-) True G68774
TU86010 lncRNA upstream 570131 7288063 ~ 7288335 (-) True G68826
AMCG00014252 mRNA downstream 295383 6399468 ~ 6414836 (-) True AMCG00014252
AMCG00014250 mRNA downstream 369810 6334515 ~ 6340409 (-) True AMCG00014250
AMCG00014251 mRNA downstream 407473 6285340 ~ 6302746 (-) True AMCG00014251
AMCG00014248 mRNA downstream 434719 6263950 ~ 6275500 (-) True AMCG00014248
AMCG00014245 mRNA downstream 456338 6252371 ~ 6253881 (-) True AMCG00014245
AMCG00014254 mRNA upstream 387 6718319 ~ 6739267 (-) True AMCG00014254
AMCG00014256 mRNA upstream 34927 6752859 ~ 6755633 (-) True AMCG00014256
AMCG00014257 mRNA upstream 96249 6814181 ~ 6860542 (-) True AMCG00014257
AMCG00014258 mRNA upstream 169094 6887026 ~ 6888090 (-) True AMCG00014258
AMCG00014263 mRNA upstream 322799 7040731 ~ 7042716 (-) True AMCG00014263
TU85055 other downstream 3881075 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4066312 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4167522 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4792037 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4807604 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 660156 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 699666 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 1419399 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 1438297 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1665353 8383285 ~ 8384224 (-) True G69156

Expression Profile