RNA id: AMCG00014256


Basic Information

Item Value
RNA id AMCG00014256
length 1023
RNA type mRNA
GC content 0.63
exon number 2
gene id AMCG00014256
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 6752859 ~ 6755633 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTTTCTGATGCGTCTCTTCCTCGCGTTGTCTCAGTCCCGTAGAACCCCGGCGGCCGATGCCCTGGCGGCCCAGGCAGCACAGGTGGTGGCCCTGTTGGTGTGCCCCATATGCTGCGAGTTCATGAAGCCCCCGATCCTGCAGTGCCGGGAAGGACACCTGCTGTGTAACCAGTGCTGGCCCCGGCTGCACCATTGCCCAAGCTGCAGAGCTGATGCCCTGGCAATGCAGGACACTGCAGCTGGCGGAGAGGCCAGTCCGTGGCAGGAGGACACACAGACGCCTGTGTCCAGCGCTGGGACTATGCTGACATACACCTCCAGGCTTGCTCTCAATCCGTACCCCAACCTGGAGGACTCGCGGTTCCAGACCTACGTGCATCTGCGACTGGTCCTGTGCCGAGAGCTCTTCAGGGACAGCGCCGACCCCCACTTGCAGCTCCTGGATGCGTTGGGCTGCGTGCTGCTGCACCTATGCCCCTTCGGCAGCGAGCCAGCTTTGCGCCATCTACACAAGAGGGTCCATCTGGAGTTGGACTTGCTGAGGCTGCTGCTGAGCATGGTGCGGCTGTCCTCCTGGAGCGAGTCCATCTTCCGGCTCCTGAGGGACGGGCTCGGCATCCTGAGCGATGTGGTGGACCTCAcgctgcagcagctgcagagCTCCCCACCCCTGGACCAGCCCCTGCCTCTGAGCGCCATGGAGGAGGACCTGCCCATGAGGGTGTGTTGCGCCGTGTTCAGGAGCCTGCAGTGCGCGGCGGATGTCCTTCTGGAGGTGGAGCAGGAGGAGCAGGAAGAGAAGGGGGAGCAGcggcaggaggaagaggaggagcacagcgaggaggaggagcagagcgaagaagaggaggaggaagaagaggatgaggaggaagagcagaGCGAGGATGAGGACGAGGATGAAGATGAGACGAGCAGCAACTCATCTGACGCGTTCTCCAACTCCAGCCAGGCCGAGGCGCCAGTCCAGCCCCACTTATCCAGATGGAAGCGCTTCCGTTAA

Function

GO:

id name namespace
GO:0016567 protein ubiquitination biological_process
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0044424 obsolete intracellular part cellular_component
GO:0046872 metal ion binding molecular_function
GO:0016874 ligase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85891 lncRNA downstream 72571 6680025 ~ 6680288 (-) True G68724
TU85889 lncRNA downstream 218158 6534480 ~ 6534701 (-) True G68722
TU85829 lncRNA downstream 644501 6107039 ~ 6108358 (-) False AMCG00014241
TU85837 lncRNA downstream 676949 6073171 ~ 6075910 (-) False AMCG00014241
TU85822 lncRNA downstream 690363 6059496 ~ 6062496 (-) False AMCG00014241
TU85931 lncRNA upstream 234970 6990603 ~ 6990867 (-) True G68757
TU85943 lncRNA upstream 288492 7044125 ~ 7045812 (-) True G68767
TU85949 lncRNA upstream 298298 7053931 ~ 7054306 (-) True G68773
TU85950 lncRNA upstream 299144 7054777 ~ 7058319 (-) True G68774
TU86010 lncRNA upstream 532430 7288063 ~ 7288335 (-) True G68826
AMCG00014254 mRNA downstream 13592 6718319 ~ 6739267 (-) True AMCG00014254
AMCG00014255 mRNA downstream 34927 6710219 ~ 6717932 (-) True AMCG00014255
AMCG00014252 mRNA downstream 338023 6399468 ~ 6414836 (-) True AMCG00014252
AMCG00014250 mRNA downstream 412450 6334515 ~ 6340409 (-) True AMCG00014250
AMCG00014251 mRNA downstream 450113 6285340 ~ 6302746 (-) True AMCG00014251
AMCG00014257 mRNA upstream 58548 6814181 ~ 6860542 (-) True AMCG00014257
AMCG00014258 mRNA upstream 131393 6887026 ~ 6888090 (-) True AMCG00014258
AMCG00014263 mRNA upstream 285098 7040731 ~ 7042716 (-) True AMCG00014263
AMCG00014264 mRNA upstream 306088 7061721 ~ 7061978 (-) True AMCG00014264
AMCG00014262 mRNA upstream 306429 7062062 ~ 7070724 (-) True AMCG00014262
TU85055 other downstream 3923715 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 4108952 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 4210162 2540317 ~ 2542697 (-) False AMCG00014134
TU84738 other downstream 4834677 1916727 ~ 1918182 (-) True G67843
TU84714 other downstream 4850244 1900640 ~ 1902615 (-) True G67832
TU86038 other upstream 622455 7378088 ~ 7380780 (-) True AMCG00014271
TU86071 other upstream 661965 7417598 ~ 7423291 (-) False AMCG00014278
TU86293 other upstream 1381698 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 1400596 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 1627652 8383285 ~ 8384224 (-) True G69156

Expression Profile