RNA id: AMCG00014259


Basic Information

Item Value
RNA id AMCG00014259
length 3780
RNA type mRNA
GC content 0.54
exon number 9
gene id AMCG00014259
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7039754 ~ 7046875 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCGccagaacagaaagaaaacaggacCCTTCCCTTTTACTTTCTGTAATTTATCACCTTACATATATTTGTTACAGTAGAAGTTCAACACTAGTCTTAACACATAGCAGCCTCTCAAACCTCAGTCATTACTGTGCGCtggcactttttattttcagtcattttctaTGGCTTTCACACCTGTCTTCCATTAGACGGAACAGAGCGGTCAGCTTTTCCAAGACAAAGTGGGAATGCTGTGACGGCGGACGACTGAtctttttggtttattttacgGTTGAGCGACTTTAATAACCCCGAGCAGGTTCTGTCGTGTGCTTTCGCTTTGCTTTTGGATACCGAGTCTGAACTTCACGTAGTGGTCTTCACCCTGCACAGAGACCGATCCGCCTGGCCTGCCACATGCCCTGATTGAAAGGGTGAAAGGTCAACTGATAACTGGGCACCATGCAAGATTTAAAAACTGACCCTCTAAGAACACGCTGTCCGGTAGAATTGACTCCTTTCTCTGCTTACGTGTCAAAAACTATGAGCGTAGATCTcatcacaaaaaaacagaacgaACGGCGCTTCCcacagtttttattgttttgctgcaAATGCTTTTTCTGTGCAGGACAGCAGATGCACATACATGTAGTCTGTACACGTGTGTGTTGTGGTTTAACACAGAAGCAGACTTGTTTTCAGCTCttttataacattttgaccCATGTAATCCACCCATTTCTTGTTCATGTCATCTGTAGGTTCTTCTCCAAAAATATCCCTCTCTAACTAGACTTTGGTATGAATGTAActcttataaaaataataaaaaataaattagaaatgaaGAGTTTGCACTAGgctgattgttgttttttttttttgaaactCTTTCtacaggacaaaaacaaaataaaatctctttaCATAAAGTGCTCTTCCCCACCTtcgtatatatatgtacaacaCACCTCATCCACCCCACAGTCTCAACCACAGAAGAGCCGCAGCTCGCTGGGCTCGTAGGTCACCGCCGGCGCTGGTACCGGCTCCCCGCCCTCCAGCGCGCTCTGCCCCCTGATTTTCAAGTTCAGGAATTTGATCTTCCAGCTGTTGGGGCCGGTGGGGGTCCGGATCAGGCCGAACACCTGCTCGAAGACCCCCAGGCACTTTCGCTCGCGGTGGATCGTCCCGGCCAccgccaccaccaccagcccGTGCGCCGAGGACACGCACTTCAGACCGCGGGGGTCCAGGTTGGGGCTGAGGAACAGCTGCTCGTCCCGGGCCAAGGCCAGCAGGCGCAGGCTCACCAGCTCCGCGCCCCGGTActcctccagctgctgctcGGCCGTGCTGTAGCAGAACTGCAGCCGCGCGTCGTCCCAGAAGTGCTGCGGCCCCCAGTCCTGCCGCGTCTGCCCCAGCGCGGGGTTCTGAGAGTTCAGAAGCTGGAAGAACCACTGGCAGAACTGGTCCCCCAGCGCCTGGCACTCGGCGGCCTGCTCCCCCCGGCCCGGCGCCGTCTCCGCCCTGCCCTCCGCCTCCACGGCCCGGCCGCTCGGCTTGGGGGCCTGCACAGCCGTCCCCTCCGGACCCCAGTAGTCCAGCGCCGTCTTGATGAGCTGGTGCTTCTCGGACGTGGGCGGCAGCACGACGCCCTCCTTGGCCAGGTAGCGGAAGATGAAGTCGCGGTGAACCTTCTTGCGCCGCAGCAGCTCCTCGGCGCTCTGGCTGTAGGCCAGGATGGCATGGAGGGCCTCTTGGCTGCTCTCCACGGTGATCATGCGGTTGGTGACGGTGTCCTTCAGCGCCAGCAGGTCCGGCTCGGCGAGGCTCTGGAGGATCTCCGTGCAGCCCGCCTTCTGCCTCTCGGACAGCCCCGACATCTCCTCTCAGTCGCCCCGGAGCAGCGCCACAAACCAGCCGATCCCCGCCTCGCCTCCGCGGCAGAGCCCGTCGCTGCGCGGCTCCGGGGGGACACAGTCCCGCAACAAAGGTTCCGGGACCGGACTGACACGACCTGGCGTCAATGCGCATGCTCCACATCACgtcattacatatatacatccaTTGGTACTGAAGAGCATACGCTCACACGATTAACAAGGCGCTGTGCCATATTATTCATCGTAGTCGTAACAGTATCGTGTGTATGTGCGAACATGCGCAGTTCTGTACTGTAAACAGTGTGTATACCACCTTAAGAATCGTCACGCAGGATGATTGACATCTAGGTTCCCAATCAAAGTGCCGCCTAAGGGGTGTTCTGATTGGTTGAGAAGGCGCAAAGGAGGGCGGAAGGTAAAACATGCGGAGCGCAGAGTAGCGTCAGCTTTATAATGTTACCTATTGAGCTTTAATCCCGTGGTAGCGGGGAGGATAGTGCGTGTGTGTCTTGTAATGGGTTCTCTGGGTGTGCAGTTGTGCCACAGATGTTGCTTCCTGCGGGTCAGAACTCTGCTCACAGCGTTCCAAAGAGACCGAACTCTGCGTTCTAGAAGCCTGCGGGTCTCGCTGGCCCGCGCCCAGGGAGGCCTGCTGTCTGTGAACCCGCACCGCGCCGTGCGCCTGGAGAGATGGAGGGGCGACCACCTCAGTGTACTCTCCTCCCGGAGGGCAAGTCAGCAACCCGCTGATGAAACTGCAGTGGCTGCTTCGCCGGGATCTCATCTGCTTCCTTATGAAAACTGTCACCTTGAGGACACAGTGAGGAGCGATCCCACCCCCGAGAGGCCACTCGTGGAATTGGATGCAGTTCCACCTCCGTCTCCGTTCGAGGAGATCACTGATGAAGACGCCTCGCAGATCAGTGTGGACCCGGGGCTGAGTCCAGTTTCGGTCTCGCTGAGGGACTATGTGAACCAGTCAGAGACGCTGCGCAGACTGGTGCTGCTCGGCGTTGACCTGTCTAAGCTGGAGCGGCGCCCCAATGTCGGGAACATGCTTCTGCGCTTGGACTTCGAAAAAGACGTCCAGGAACGACTGCTCTTCCTCAGAGACGTTGGTGTGGAGGAGATGCATCTGGGTCCTGTCCTCACCATAAATCCCTTCATTCTCACAGAAAACATGAAGAACCTGCAAGCAAGGGTGTCTTACCTGAGGCTCAAGAGGTTCAGCGCCGATGCAATTGCTCGAATGGTTTCCAAAGCTCCTCACCTGCTAAACTTCAGTGTGGAGAGGCTGGACAAcagactgagtttcttccagAAGCAGCTTGAACTGAATGTACAAAAGACGCAGGACCTTGTGACGCGTTTCCCCAGGTTGCTATGTGGGAAACTGGACCCGGTGAAAGAGAACCTCAAAGTGTGCGAAATGGACCTGGGGTTCCGGAAGAATGAGGTCCAGCACATGGTCACCAGGGTGCCGAAGCTTCTGACGACCAACAAGAAAAAACTCACCGGGATCTTCGACTACGTACACAATACGATGGGAATTCCACACTCTCTCATTGTGCGATTCCCACAGgTGCTGAATGCAAGGCTTCTGAGGATCAGAGAGAGACACTTGTTCTTGAAACACTTGGGCAGAGACCAGTTCGACCTGGCTGAGCCCAACTACGTCTCTCTGGACCAGTTAGTCTCGCTGCCCGATCATCTCTTCTGCGCCACTATCGCCCTGGCTTCTCTCGAGGACTTTGACGTGTTCCAGAAGACACTTTGATTTAAAACCTACAGATCTGACAACAAGTCCTGGATTACTTAATATCAAAGTCTGTGAAACTACTTTTGATAAGTACTTTTTGAATTTgcacatttcctgttttgtgttAAGCTTATGAATATTgcc

Function

GO: NA

KEGG:

id description
K15032 MTERFD; mTERF domain-containing protein, mitochondrial

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85912 lncRNA upstream 295643 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 324933 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 792705 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 833178 6204178 ~ 6206576 (+) True G68686
TU85805 lncRNA upstream 924790 6112656 ~ 6114964 (+) True G68665
TU85947 lncRNA downstream 9832 7056707 ~ 7058319 (+) True G68771
TU86061 lncRNA downstream 422203 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 579113 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 827652 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 967869 8014744 ~ 8015003 (+) True G69006
AMCG00014253 mRNA upstream 307237 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014243 mRNA upstream 799833 6234803 ~ 6239921 (+) True AMCG00014243
AMCG00014237 mRNA upstream 985319 6033437 ~ 6054435 (+) True AMCG00014237
AMCG00014229 mRNA upstream 1160497 5866905 ~ 5879257 (+) True AMCG00014229
AMCG00014224 mRNA upstream 1264993 5755529 ~ 5774761 (+) True AMCG00014224
AMCG00014260 mRNA downstream 3461 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014261 mRNA downstream 26449 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014267 mRNA downstream 182198 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014266 mRNA downstream 231247 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014273 mRNA downstream 398141 7445016 ~ 7455956 (+) True AMCG00014273
TU85565 other upstream 2387790 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2387790 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 4329425 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 299320 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 366765 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 2956183 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 7289983 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8628756 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile