RNA id: AMCG00014266


Basic Information

Item Value
RNA id AMCG00014266
length 1203
RNA type mRNA
GC content 0.67
exon number 4
gene id AMCG00014266
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7278122 ~ 7285235 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGTTGTCTTGATGTTATGTATCACCACCAGACCTATGGAGCGCACCAGTATTTGCCAGCGACGTCCGCGGCGGCGGCAGTGGTAGCATACAAGGCTGCCTATTAccaccaccagcaccagcaccagcaccagcagcagcagcagcagcagGCTCGGAGCTGCCTCTGGGTCCGGGCCAGTGACGCCCCGGTGGCAGCCGCCCGGCCCGGCCTGTGGCACCGCGCTGGCAGGGCGCACACAAAGCTGGCAGCTGGAGTTTCCTCAAGACGCTCCACTGTGTGCAACATGCAAAAGCGGTGCACTCCTCTCCTGacagccctctctctcttgcagaaGAAGCTCTGTGTGTACAGTAAGATGCAGGACTCCCTGGACGCAGTGGGGAAGCAGGTGCAGCAGCAGGAGAcagcgcagcagcagcagcagcaggaggcgGAGGCGGAGGAAGAGGGAGGCAGGGCGGGGGGGCTGGTGAAAGAGCCCCAGCCCGCCGAGACGGAGTACCTCAGCTCCAGATGCGTCCTCTTCACCTATTTCCAGGGGGACATCGGGGATGTGGTGGACGAGCACTTCTCCCGCGCTCTCAGCCAGCCCAGTGGCTTCAGCGCCTCCCCGGCCAAGACTCCCCGCCCCGTGGGCAGCGCGCTCTGGAAAGAGTCCGTGCCTGATGGCGGGCAGTGCGCTTTCCCTGCGTCGTTCTGGAGCAGCGCCTACCCGTCCCAGAGCGGCGCCTGCCTCCCAGCCGTGCACCCAGAGTTCCCCGCCAACGCCGCGTTTCACCCCCCTGACGCCGGCGCCTGGGGCGGGCACGGTCTGCACCAGTCCGGCCTGGCCCCTCCACCCACCATGTCGGACTCCTGGCACTACTCCCTGGGGGCGTCCACCAGCCCCTCCTACCCCCACGTCCACGAGGTCTACTCCCACATCCACCCCCGGCACCCACACGCCCACCCGCACCCCATGCTGCACCCTCACGCCCACGGCTCGGCCCTGGACCCCCGCTACAGCCCCCTGCTGCTGCCCAGCGTGCGTCCCTCTTGCGCCCCCGGCCCCCACTGTGATGTCACAAAAGCCGAGCCCGACTCGGCCCCCGGCCACGGGCAGCCCTGGACCGCGGCCTTCCACGGCGCAGTGGACATCGCATACGACAACGGTGAGCGAGACTCTCCCTGTCTGCCACCAGCGTCTGTCtggcactga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU85947 lncRNA upstream 219803 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 534011 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 563301 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1031073 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 1071546 6204178 ~ 6206576 (+) True G68686
TU86061 lncRNA downstream 183843 7469078 ~ 7469310 (+) False AMCG00014272
TU86116 lncRNA downstream 340753 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 589292 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 729509 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 848053 8133288 ~ 8136210 (+) True G69023
AMCG00014267 mRNA upstream 40560 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 204520 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014260 mRNA upstream 223215 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014259 mRNA upstream 231247 7039754 ~ 7046875 (+) True AMCG00014259
AMCG00014253 mRNA upstream 545605 6731624 ~ 6732517 (+) True AMCG00014253
AMCG00014273 mRNA downstream 159781 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014272 mRNA downstream 179268 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014274 mRNA downstream 198827 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014281 mRNA downstream 352586 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 360183 7645418 ~ 7653546 (+) True AMCG00014282
TU85565 other upstream 2626158 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2626158 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 4567793 2706840 ~ 2710329 (+) False AMCG00014146
TU86015 other downstream 60960 7346195 ~ 7349467 (+) True G68830
TU86046 other downstream 128405 7413640 ~ 7416594 (+) True G68848
TU86705 other downstream 2717823 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 7051623 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8390396 15675631 ~ 15679788 (+) True AMCG00014490

Expression Profile