Gene
RNA
| Item | Value |
|---|---|
| RNA id | AMCG00014267 |
| length | 1077 |
| RNA type | mRNA |
| GC content | 0.63 |
| exon number | 7 |
| gene id | AMCG00014267 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CM030128.1 |
| NCBI id | CM030128.1 |
| chromosome length | 42883965 |
| location | 7229073 ~ 7237562 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| species | bowfin (Amia calva) |
| id | name | namespace |
|---|---|---|
| GO:0001708 | cell fate specification | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| id | description |
|---|---|
| K09363 | POU1F, PIT1; POU domain transcription factor, class 1 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU85947 | lncRNA | upstream | 170754 | 7056707 ~ 7058319 (+) | True | G68771 |
| TU85912 | lncRNA | upstream | 484962 | 6743863 ~ 6744111 (+) | True | G68738 |
| TU85895 | lncRNA | upstream | 514252 | 6713171 ~ 6714821 (+) | True | G68728 |
| TU85863 | lncRNA | upstream | 982024 | 6244902 ~ 6247049 (+) | True | G68698 |
| TU85846 | lncRNA | upstream | 1022497 | 6204178 ~ 6206576 (+) | True | G68686 |
| TU86061 | lncRNA | downstream | 231516 | 7469078 ~ 7469310 (+) | False | AMCG00014272 |
| TU86116 | lncRNA | downstream | 388426 | 7625988 ~ 7626404 (+) | True | G68904 |
| TU86203 | lncRNA | downstream | 636965 | 7874527 ~ 7874742 (+) | True | G68982 |
| TU86229 | lncRNA | downstream | 777182 | 8014744 ~ 8015003 (+) | True | G69006 |
| TU86247 | lncRNA | downstream | 895726 | 8133288 ~ 8136210 (+) | True | G69023 |
| AMCG00014261 | mRNA | upstream | 155471 | 7073324 ~ 7073602 (+) | True | AMCG00014261 |
| AMCG00014260 | mRNA | upstream | 174166 | 7050336 ~ 7054907 (+) | True | AMCG00014260 |
| AMCG00014259 | mRNA | upstream | 182198 | 7039754 ~ 7046875 (+) | True | AMCG00014259 |
| AMCG00014253 | mRNA | upstream | 496556 | 6731624 ~ 6732517 (+) | True | AMCG00014253 |
| AMCG00014243 | mRNA | upstream | 989152 | 6234803 ~ 6239921 (+) | True | AMCG00014243 |
| AMCG00014266 | mRNA | downstream | 40560 | 7278122 ~ 7285235 (+) | True | AMCG00014266 |
| AMCG00014273 | mRNA | downstream | 207454 | 7445016 ~ 7455956 (+) | True | AMCG00014273 |
| AMCG00014272 | mRNA | downstream | 226941 | 7464503 ~ 7482560 (+) | True | AMCG00014272 |
| AMCG00014274 | mRNA | downstream | 246500 | 7484062 ~ 7489351 (+) | True | AMCG00014274 |
| AMCG00014281 | mRNA | downstream | 400259 | 7637821 ~ 7642535 (+) | True | AMCG00014281 |
| TU85565 | other | upstream | 2577109 | 4649200 ~ 4651964 (+) | True | G68475 |
| TU85567 | other | upstream | 2577109 | 4649200 ~ 4651964 (+) | False | G68475 |
| TU84896 | other | upstream | 4518744 | 2706840 ~ 2710329 (+) | False | AMCG00014146 |
| TU86015 | other | downstream | 108633 | 7346195 ~ 7349467 (+) | True | G68830 |
| TU86046 | other | downstream | 176078 | 7413640 ~ 7416594 (+) | True | G68848 |
| TU86705 | other | downstream | 2765496 | 10003058 ~ 10008648 (+) | True | G69406 |
| TU87778 | other | downstream | 7099296 | 14336858 ~ 14356868 (+) | False | AMCG00014461 |
| TU88057 | other | downstream | 8438069 | 15675631 ~ 15679788 (+) | True | AMCG00014490 |
| species | RNA id | representative | length | rna type | GC content | exon number | chromosome id | location |
|---|---|---|---|---|---|---|---|---|
| zebrafish (Danio rerio) | TCONS_00074094 | True | 1170 | mRNA | 0.55 | 7 | NC_007120.7 | 19132885 ~ 19161982 (-) |
