RNA id: TU86061



Basic Information


Item Value
RNA id TU86061
length 233
lncRNA type sense_over
GC content 0.62
exon number 1
gene id AMCG00014272
representative False

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7464503 ~ 7482560 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


CACTGAAATCGAGACCAGACCAGTCTCACCCCCcgaaacacacactcacagccgGCTGGCCCCACCTTACCTTCCATATCTGGGCCCTCTGCTGGGCAGGCAGCTCCCGGCCCTGGATAATGTTCCTCACCGTCTCCAGGTCACAACCTCCCGAGTCCAGAGCCTCCGCCAGCTCCCGGTCCCTGAGAGAGGCAGGGGATACAGGTCAGTCCATGATGAGGGACAGCCTCAGC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU85947 lncRNA upstream 410759 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 724967 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 754257 6713171 ~ 6714821 (+) True G68728
TU85863 lncRNA upstream 1222029 6244902 ~ 6247049 (+) True G68698
TU85846 lncRNA upstream 1262502 6204178 ~ 6206576 (+) True G68686
TU86116 lncRNA downstream 156678 7625988 ~ 7626404 (+) True G68904
TU86203 lncRNA downstream 405217 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 545434 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 663978 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 1265013 8734323 ~ 8735939 (+) True G69206
AMCG00014273 mRNA upstream 13122 7445016 ~ 7455956 (+) True AMCG00014273
AMCG00014266 mRNA upstream 183843 7278122 ~ 7285235 (+) True AMCG00014266
AMCG00014267 mRNA upstream 231516 7229073 ~ 7237562 (+) True AMCG00014267
AMCG00014261 mRNA upstream 395476 7073324 ~ 7073602 (+) True AMCG00014261
AMCG00014260 mRNA upstream 414171 7050336 ~ 7054907 (+) True AMCG00014260
AMCG00014274 mRNA downstream 14752 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014281 mRNA downstream 168511 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014282 mRNA downstream 176108 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014283 mRNA downstream 190158 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014285 mRNA downstream 244079 7713389 ~ 7729891 (+) True AMCG00014285
TU86046 other upstream 52484 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 119611 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 2817114 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 2817114 4649200 ~ 4651964 (+) False G68475
TU84896 other upstream 4758749 2706840 ~ 2710329 (+) False AMCG00014146
TU86705 other downstream 2533748 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6867548 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 8206321 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 8206321 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8660215 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile