RNA id: AMCG00014285


Basic Information

Item Value
RNA id AMCG00014285
length 4529
RNA type mRNA
GC content 0.49
exon number 17
gene id AMCG00014285
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7713389 ~ 7729891 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCACTTTTGCTGGGGTGACACAGGCGGACACGAAGGGGCTGCCTCTTTCCAGTCAAtcatttagttacattttgtgtttattctagTTGCTACACCGAATTAATGGAGAGACGTCCCCGGGGGGATTCTGAGAGACGGGGAGGGAGACAAGGGATGCCCAGCCACAGTGTGAGCGCAGTGACAGAGACCAGCACCAAAGACAGGATGGATCTTTATTGACTGGGACACAACTGACCACTGTAAGCCAATGTTATCACCAAAGAACACACGGCGGCATACCTTATCTACCTGGGAGGATATGTGTGACAATCTACACTGACAGCTCTCCCGCCCCTCCTGGTTTGCTCTTTTGCTCCTTCTTGCCAGCACTGACTCTGTCCTGCCCTGTCTGTGGATTAACGAGTAAAGGAGCATGGCAAAAACACCAGACATCATGAACCTCTCGTTCCTACTGGACCACGAGAGAGAGATGATTCTCCGAGTTCTTCAGAAGGATGAGAAGCTAAGGAAGTTGGAAGAGAAGAGGATAAGGAAACTGAAGAATGAGTTGCTGGAGATCCGCAGAAAGGGCTCCCGGAAGCACCAGGAGCCGAGCGACAGGATGTGCGTTCGCTGCCAGAAGACCCTGGGCCTGATCTTCGACCGCGGGGAGCTGTGCGAGGAGTGCAAGGAGCGCGTGTGCAGCGAGTGCCGCGTAGTGCTGCCCAAGAACAAGTGGAAATGCGCCGTCTGCAACAAGATCTCGCAGCTGAAGGTGGTGACCGGGGAGTGGTTCTTCGAGGAGCGATCCAAACGGTTCTCAGAAGGGAATGTGCTGAGCTGTGATGTCGTCAAGCAGTCCATCATCAGCAGTCCACCAGCAGACAGTAAGACTGACCAGAGAAAACAGCAGGCCGCCCAGGCAGCAGCAGAAAGACCAGACACCCCAATGTCTGGCAGGAGTGCCATCAGGAACATGCTGGATGGACCAGGGAAGAAAGGGATTAGGCAGGATAAGAGAGGCATTCGACCGCTGCTCAAAGGTGAGAACGCTGCAGATTCTCGGCCCGAAGACTCCAGGAGTATAGGCTCGGCATCAGACCTGGACGCCTACAGTGTCCGCAGTGGCCGATCTACCCCCCGCTCCAACAGAGGCAGTAATATTGCTCTGGAGTCATCAGGGATGCCGACAGTTCCCAACAACCTCCGCTCTAACACCCCCGGCAGATCCCCGACGCCCAGTCAACGCAGCGCGGGCTCCGGGAACAGCAGGAGGGCGGACGGTGCTGAGAGCGTGGCGAGTTTCCGTGCCAGTGAAAGCGTGCACGATGACATGGCCCATCAGAATTTCAAGAAGACATCTGGGACTCCTTCGATTGCAATTTCTCGAGCTTCTCTCTCATCAGATCGCAGCCGCTCGGAGGTGGACCTGAGTGGCCCATGTGCCGGGTTTAACGAGGAGATGCTGAGCCTGCGGTGCCGGTCGGTGCCGGGAGAGCTGAACGATGCGTTGATGGGGACTgaagaggaaggggaggaggaCATTGACGAGCTGATGTCCGCACACAACTTCTCCACCCACCGGAACATGAAAAGCGCTTTGTCTGTGGCTTCGGACAGGAAGTGGAGTTATCTAAACGTTCCCGACTCTGACGCTGAAACTAGCAGTCTGAACAGCATGATGAGCGTGTACAGCGAGTCGGGGGACTACGGGCACGCCAACGTTAGCGGCGAGATCCTCCTCGGCATCAGCTACAGCTACAAGACCGGCGCTCTCAACATCCTGGTCAAAGAGTGTCGCCACCTGGCCATCGGCGACGAGAAGAAGCAGAGAACAGACCCCTATGTGAAGACATACCTCCTACCAGACAAATCTCGCCAGAGCAAGAGGAAAACGAGCATAAAATCCAACACAACTAACCCGGCTTACAATGAAACATTAAAGTATGTGATCAGTCACTCGCAGCTGGAGACGCGCACCCTGCAGCTGTCTGTGTGGCACAATGACAGATTTGGACACAACAGCTTCCTGGGTGAGGTGGAAGTTCCCTTTGATTCATGGGAGTTTGAGAACCAGACAGAGGAGTGGTTTTCGCTGCAGCCCAAGATGGACGCGGGTGTCGATCCAGTCCTGCAGTACAAGGGGGAGCTGTCCATAGTGCTGCGCTATATCCCACCAGAGAAAAACCTCATGCTGCCTCTGGATCAGTTTCAAGCTAAGAAAAGTTTTCtgaaagggaagaaaacaaatacccAGCTGCCCAAAGGCGGAATAGTGGAGTTGGTTATAAAAGAGGCCAAAAATTTAACCGCAGTGAAATCAGGCGGCACGTCAGACACATTTGTTAAGGGGTACCTACTTCCAGACAACAGCAAATCTTCAAAGCACAAAACCCCGGTGGTGAAGAAGAGTGTGAACCCGCAGTGGAACCACACGTTTAGCTACAGCGGCCTGCAGCCCAGCGACCTGCAAAACGTCTGTCTGGAGCTCACCGTGTGGGACAAGGAGTCGCTGTCCAGCAACGTGTTCCTGGGGGGCGTCCGTCTCGGCCTGGGGAACGGTCTGAGCTATGGGAATGAAGTGGATTGGATGGACTCGCAAGGGGAGGAGCAACGGGTCTGGCGGCGAATGATTGACAACCCAGAAGCCCCTCAGGAGAGCACACTGATGCTGAGGTCCACGATGGGGAAACGCACGACCTGAGCAGACTAGGAAGATACAAACTGTTTTCAGCTCTCCGTTCCCTCCTGCAACACAAGTTGGATGGAGCCCAGCAGACCTATCCCATGCAAAAAGCCTTGGGTTGTACTGTTCAGGacaatgtactgtattatgCCCTATAAATGCATAACCTGCTCTAACGAAGaccaaacattaaacaaaagacGGCGCTACAGAATAAGCTGGAACAGGACCAGCTGTTCTGACTATGCACACTAGGTGGactttcaattaaatgttgttGAGATTGTCTAATGTTGTTCAGAAAGGTCTTGGAATGATTAAGAAAGAGTCTAATTTGTGCAAACAGGACATCGTTCGTCCTTTAGGTGTTTCAGTTTGACACAACATATGTGGTCAGGATGTTTTAGTGGGAGCCCGTTCTTGGGATGTACCTCTGGTGCTTCAGCTGAACTGACCCTGGAAACacgcccccccaccctgcctcGTAACAGCACATTCACAGCGACAGATTCAAGATCATCAGTAAGCCCTGTTCTCTAGAATGGTGGTATAGttacaaagaaatgaaaaggagGATGCTCTCTAAAGGTGGACTTGGCTACTTTTAACTTTCAtctgtaataaatattttacgTCCACATGAAAGAGTTCATAAAATTTCATAAGGAAGCACACAATCATGCTATTTGctcatttgaaaaatgtacattccaaacacacaaataccTGGTTTAATATTCATTAGTCAGCTATGCCAGCTTTGTGCAGCCAGAAGCATTTCAGAATGCATCGtatggtttgtttattctgGAAAGTTTAGCAACCAATTCAGACACCTGGTTTAAATGTTCTCTCAGCGAGGCATTTGGACAAACCAACCTTGCTTTCCAGCCCAGACGTcttgtggaaatgtatttgctgGTCACGTCTGTGAAAAAAGGAGCCCAGCTGCACAAGTCAGAGCTTCTACAAAACATCTGATTGATCATCTGAAAAGACATGCACTAAAGATGTGGATATGTGAGGGCCCAGAGGGTTTTGCAGTAACTGCAGCGACTTCTCCAGGTGCATATTTTCTGTACAATATGTGGATAACATTTACTGTGCACTTATCTCATCAGTGAGAGATTCACAGAGAGATCTCCAGTGAAATGGAAAGGCAGAAGAAAGCACAATTACGATGTGTACTCACTATAAAGGTTTCCTGTTTCTCCACAGTAGGCATTAGACAGGTTGGAGTTTGCCCTTTTGCAGCAGTCGATCTTGGCaattattgtaatgcatttactAGGCATAATACTACATTTTCCCCTCCTTCTAAATCATCcaagttatatttttgtaatagaGCTACATTTTTCATAACCAATTGTTACGTGACTGTGAATCTTGATAACCCGGCTGTCCTTAGAGACTGAAAAGGGAAATTGCTTTGTTGTAATGTTAACTGTAAGCATTTTGATATATGTtgaacaaatgtttttgatttcaaGAAGCACATATTAACTGTAGACAcaatttgattgatttgaaaaTGCGGTCAGCTTTCCTGGAAATGAGTGGTAATATCAAGCCAGACAGTGCTAACCACTTTCTATTACTTTGCATTTGTCTACCTTCAACCTTGTTTCAGTGACAAATCTTTACAGTTGTTCATTTCCTATCTGCTATGTATTTGTCCTCACCtatttttctgctttctggCAAAACAATAGGTGTTGCTGTTAACCAGTTTACCTGCATCTGTTACTCACTATATCCCTGTCTCTGTACCTCCGTCTCTTTGTAAGATTAAAGGAAATGCTTtggttataatatatattttctgtgttgtcaTATTAAAAGTGGAATATGTTTATTGGGG

Function

GO: NA

KEGG:

id description
K17598 SYTL; synaptotagmin-like protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86116 lncRNA upstream 86985 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 244079 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 655070 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 969278 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 998568 6713171 ~ 6714821 (+) True G68728
TU86203 lncRNA downstream 144636 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 284853 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 403397 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 1004432 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 1160695 8890586 ~ 8890834 (+) True G69232
AMCG00014283 mRNA upstream 48860 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014282 mRNA upstream 59843 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014281 mRNA upstream 70854 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014274 mRNA upstream 224038 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014272 mRNA upstream 230829 7464503 ~ 7482560 (+) True AMCG00014272
AMCG00014288 mRNA downstream 53838 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014289 mRNA downstream 115665 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014290 mRNA downstream 270199 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014292 mRNA downstream 390484 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014294 mRNA downstream 398313 8128204 ~ 8131793 (+) True AMCG00014294
TU86046 other upstream 296795 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 363922 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3061425 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3061425 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5003060 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 2273167 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6606967 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7945740 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7945740 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8399634 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile