RNA id: AMCG00014288


Basic Information

Item Value
RNA id AMCG00014288
length 1533
RNA type mRNA
GC content 0.48
exon number 10
gene id AMCG00014288
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 7783729 ~ 7795382 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGGGAACTCATGTATTATCACCTAAGATGGCACACTAAATATTACGATCTGCTGATTGATGCATGTGCCACAGTGTCAGACCCCTCCCATCCCAGCACAAGTTTTGCAGCTGTTCAGCGCTACAGCTGAGGTTGAATAGCCTACACCTAAACCTGTCAAAAAGGCAGAATTGTTGCTAGGATCGAGAAATTACAAGtctcttttcattttagttCCGCGCTATAGAAGCAGGGAAGATTAATTGTAACTTGACAGAACCGCCATGTTTCGTTTCAGCAACACTTTAGTTCGTGCTCTGAAGAGTGTGCAATGCACTGCTGTGCGGGATTTGCGTGTTGGAGGGGTGGCTTTAGGTGCTGTGAATTTGAAGGGTCGCAATTTCATAACCCTAAAGGACTTTGATTCGGAGGAGATAAAACATCTTCTGTGGACATCAGCAGActtaaaacacagaattaaaaaggaagGACAGAATCTTCCTTTGCTTCATGGCAAGTCCATCGCCATGATCTTTGAGATGAGGAGCACCAGGACTCGGATGTCTACAGAAACAGGGTTTGCGCTGTTAGGAGGGCATCCCTGCTTCCTCACGTCTCAGGACATTCACCTGGGGACCAACGAGAACACCACTGACACTGCCCGGGTCCTCTCTGGACTCACAGACCTGATCCTCGCCCGGGTCAGCAGACACTCAACCATCGAAGAGCTATCCAAGGAGGCCTCTGTACCAGTCATCAACGGGATGTCCAACTTCAACCACCCCATTCAGATACTGGCAGACTTCCTCACTCTGCAGGAGCACTATGGGTATTTGAATGGCCTGACGTTGACGTGGATCGGTGATGGGAACAATATACTCCACTCCTTCATGTTGACAGCAGCCAAACTGGGGGTCCATCTCAATATCGCAACACCAAAGGGATATGAGCCTGCAGCCGGTGTGATTCGAGAGGCGGAAAAATTATCCAAAGAGCATGGGACCAAGTTGCTCCTGACTAACGACCCGTTGGAAGCGGCTCGTGGAAGTAACGTGTTGGTGACGGACACGTGGATAAGCatggggaaggaggaggagaggaaccAAAGGCTGAAGGATTTCCATGGTTACCAAATCACCATGCAGACCGGACGCTTGGCGGCCCCTGACTGGACCTTCCTGCACTGCCTGCCCCGCAAACCACAGGAGGTGGACGACCAGGTCTTCTACTCCCCCCACTCCCTGGTTTTCCCAGAGGCTGAAAACAGGAAGTGGTCTATCATGGGCCTGATGGTGTCTCTGCTGACCGATTATACTCCCCAGATACCAAAGCCCAGGTTCTGATCCAGTGGCCCATGGGAATGTACATTTCttctaaaacattatttattcttaatatgCAGTAACggaagaaatgaaataaatggaGGGATACTGTCTTACATGAGTTTGTCAGTGAAAATTGTAAGAATACATCTTTTCACAAAGATATTtatgcttttgtcttttgtacAGTAATTTAGGAAGTGCACAtccttaaaatgtgtatatttaag

Function

GO: NA

KEGG:

id description
K00611 OTC, argF, argI; ornithine carbamoyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86116 lncRNA upstream 157325 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 314419 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 725410 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 1039618 6743863 ~ 6744111 (+) True G68738
TU85895 lncRNA upstream 1068908 6713171 ~ 6714821 (+) True G68728
TU86203 lncRNA downstream 79145 7874527 ~ 7874742 (+) True G68982
TU86229 lncRNA downstream 219362 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 337906 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 938941 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 1095204 8890586 ~ 8890834 (+) True G69232
AMCG00014285 mRNA upstream 53838 7713389 ~ 7729891 (+) True AMCG00014285
AMCG00014283 mRNA upstream 119200 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014282 mRNA upstream 130183 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014281 mRNA upstream 141194 7637821 ~ 7642535 (+) True AMCG00014281
AMCG00014274 mRNA upstream 294378 7484062 ~ 7489351 (+) True AMCG00014274
AMCG00014289 mRNA downstream 50174 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014290 mRNA downstream 204708 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014292 mRNA downstream 324993 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014294 mRNA downstream 332822 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014293 mRNA downstream 365026 8160408 ~ 8161280 (+) True AMCG00014293
TU86046 other upstream 367135 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 434262 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3131765 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3131765 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5073400 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 2207676 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6541476 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7880249 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7880249 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8334143 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile