RNA id: AMCG00014290


Basic Information

Item Value
RNA id AMCG00014290
length 1542
RNA type mRNA
GC content 0.52
exon number 4
gene id AMCG00014290
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8000090 ~ 8003278 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGCCACAGCCCGGCCTGGCCGCTGGATTATTTTTCAGAGCTCGTAAAAAGAAGCAGCACGGCCTCCCGTGACAAAGGGATTAATAGGGGGTCTGGGGAGATTGGCGTCAGCTGTGGGAATTAGCCAGGACCTGGTGCATTACAGGTTAAAAGACAACAACTGGCAGCGACGGCGCGGCGGGGAGAGCATTTTAGATTGAAGCCCACCGCCGGCCACATGTGAAAGACGGCTCCgaggggctgggctgggctgccGCCTCGTAAACTTCCTCTTAAACAACAGGAACTGCTCGTTAGCGAGGGGGAGGCAGAGCCGCGGCCTGTGATGGGAGCCGGGCTGGCGGGCAGCAGTGCGCACGACTCCGGGCCGCGGCGCTGCTCGCATCAGGTCGCTGTCACGCTTTGTGGCCGCACTGCTCGACAGAGGAAGCCCAGACAACCTTATCGGCAGGCAGGCGGACGGCTGGCTGACACGGCGCCCCGGCCCCGGCCCTCGGTGTCCGCAGGATGGAGGGCTCTCCGACTCTGCGGCTGGGGACGCCTGCGCGCCGCTTCAAGTGATAAATGCGCCCTAACCGTGCGGAAGAAAGAGAGGGGTCAAGTGACAAGGTCAGGGGTGAGGCCCAGCATACATCCCGTGAAGGCAGCGCTGGGGACGGCCTGTTTCCGAGTCATCATCTGACTCTGCGGgcccaaacaaaacaacaagccCAAAATACCAGCTGACCTCATTTCCCGTGCAGGCCGTGCATGTGGCGGCTTCTTGGAGCTCTGCACTCTCCTCAGAGACAGACTTCACACATGTGCTCAAAACCAGACCGAGAGCTGCGCTGGGAAATCTGTTGGGGCAGCTTAACTGTCCTCATTTCTCTGACTTTGTCCCTGTAGCTGGAGGTCAAGGGTGCACAGGGTGGGTTTCAGAAAACCTTCTGCAAAAGGCCGCTGCTCCTGTATCTTCTAAAAAGGACGGGACAGGGTGGTGTTTAAGGTTATAAGGACTGGAATCACACTgagcatttcctgtttttttttttccactctctagaaaaatgttgttttctgacAAACACTAGGAACCCGtgtacatatttacaatttgaGACCATTTACCAACAGCCGCGCtggctctctgtgtgtttgtgttgacaGGGAATTAACCATGTCTCTGAAATCACCGCCCTTGTGAAACCTTGGTAAATCGAGTTGCTTTCAGTTGAGGGAAAAACAGTGTGCGTTAGACCATCCTGAATTACACGTATATCTATTTTTGAAGTTCACTTATTGTTTCATCTTCACCCGCATTAGTGAAAGCCTCTCTGACTTCTCATAAACCAGACAGGCAGCTTCAGGACTCCGTGGAAACGTCCTGTGTCTTAACTCAAACTTTAATTAGGAGTGTAAATTAAATCAACCTTTTGTTGATCTTAAAGAGATCTCTCATATTTCTGAATAAAGAAGAGAGGGTAATTcaaaggtgttttttctttgttttattagcaGGAAACGGGGATTTTTAATGCCGATGGGAACCCGGTTTGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86203 lncRNA upstream 125348 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 373686 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 530780 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 941771 7056707 ~ 7058319 (+) True G68771
TU85912 lncRNA upstream 1255979 6743863 ~ 6744111 (+) True G68738
TU86229 lncRNA downstream 11466 8014744 ~ 8015003 (+) True G69006
TU86247 lncRNA downstream 130010 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 731045 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 887308 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 1363259 9366537 ~ 9376350 (+) True G69326
AMCG00014289 mRNA upstream 144739 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014288 mRNA upstream 204708 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014285 mRNA upstream 270199 7713389 ~ 7729891 (+) True AMCG00014285
AMCG00014283 mRNA upstream 335561 7659468 ~ 7664529 (+) True AMCG00014283
AMCG00014282 mRNA upstream 346544 7645418 ~ 7653546 (+) True AMCG00014282
AMCG00014292 mRNA downstream 117097 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014294 mRNA downstream 124926 8128204 ~ 8131793 (+) True AMCG00014294
AMCG00014293 mRNA downstream 157130 8160408 ~ 8161280 (+) True AMCG00014293
AMCG00014299 mRNA downstream 201544 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014306 mRNA downstream 260158 8263436 ~ 8321739 (+) True AMCG00014306
TU86046 other upstream 583496 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 650623 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3348126 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3348126 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5289761 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1999780 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6333580 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7672353 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7672353 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 8126247 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile