RNA id: AMCG00014294



Basic Information


Item Value
RNA id AMCG00014294
length 1089
RNA type mRNA
GC content 0.57
exon number 8
gene id AMCG00014294
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8128204 ~ 8131793 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGACGACACGTATGAAGCTGGACCAGATACGGCATCGTCGTTTTTCAACGCACACGTCCAGGTGTAAAGCCCAGCACAGCAGCCCGGGCGCCGGCGGACAGCAGGACGCAGAGCCGGACGATgcggagctggaggagctgtgTCAGCAGCGCATCGCAGACAAGGTCGGCAGCGAGGACCAGCGGGTGTTGGTCATTCATCCAGATGTCAAATGGGGAGCAAAGAAACAGCTTCTCACCACAGccGAGCTTCAGATGGCGGAGGCTGTGGGACTCGTCCACACTCTGCAGAACTGGAGGGTGGTGGACAAGATCATCGTCTCCACAAAGACTCCTGAGAAGAAGAGGATTTTTGGCAAAGGAAACTTTCAGGCTCTGACAGAGAGGATCAAGGGCTTGCCGCAGATCACCGCGGTGTTTATGAATGTAGAGCGCCTGTCTCCCATTACAGAGagggagatggaggaggCCTGGGGGGTGAAGGTGTTGGACAGATACACCGTCCTGAGGAACGAGCTGGCAAACCTGGATCAGCAGGGTGGAGGTTCCAGGTATATTATGGGCTCAGGCGAGACGTTAATGGAGGTGCAGCAACGCCTGCTGAAGGACAGAGAGCTGAAGCTCCAAGGCGCCCTGGacaaactgaggaagaagcgGCACCTGCTCCGTGCCCAGCGCCAGCAGAGAGACCTGCCCGTGGTGTCCGTCATGGGCTACACCAACTGCGGGAAGACGACCCTGATCAAAGCCCTGACTGGAGATGTGGGGCTGCAGCCACGAGACCAGCTCTTTGCCACGCTCGATGTCACTGTTCATGCCGGCCAGCTGCCCAGTCACATGACTGTCCTCTACACCGACACCATCGGCTTCCTGTCCCAGCTGCCCCACCAACTCATCGACTCCTTCTCCGCTACCCTGCAGGACGTGGTGCACTCTGACTTGATAGTTCATGTCAGAGACATCAGCCACCCAGAGAGCCTGAACCAAAAAGTCAACGTATTGAAGGTGCTCAGGGACCTCCAGATCCCCAGCCATCTGATGGATAACATAATCGAAGTCCACAACAAGATCGACCTCATTGATGGGTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86229 lncRNA upstream 113201 8014744 ~ 8015003 (+) True G69006
TU86203 lncRNA upstream 253462 7874527 ~ 7874742 (+) True G68982
TU86116 lncRNA upstream 501800 7625988 ~ 7626404 (+) True G68904
TU86061 lncRNA upstream 658894 7469078 ~ 7469310 (+) False AMCG00014272
TU85947 lncRNA upstream 1069885 7056707 ~ 7058319 (+) True G68771
TU86247 lncRNA downstream 1495 8133288 ~ 8136210 (+) True G69023
TU86463 lncRNA downstream 602530 8734323 ~ 8735939 (+) True G69206
TU86492 lncRNA downstream 758793 8890586 ~ 8890834 (+) True G69232
TU86614 lncRNA downstream 1234744 9366537 ~ 9376350 (+) True G69326
TU86679 lncRNA downstream 1769657 9901450 ~ 9910048 (+) True G69384
AMCG00014292 mRNA upstream 1109 8120375 ~ 8127095 (+) True AMCG00014292
AMCG00014290 mRNA upstream 124926 8000090 ~ 8003278 (+) True AMCG00014290
AMCG00014289 mRNA upstream 272853 7845556 ~ 7855351 (+) True AMCG00014289
AMCG00014288 mRNA upstream 332822 7783729 ~ 7795382 (+) True AMCG00014288
AMCG00014285 mRNA upstream 398313 7713389 ~ 7729891 (+) True AMCG00014285
AMCG00014293 mRNA downstream 28615 8160408 ~ 8161280 (+) True AMCG00014293
AMCG00014299 mRNA downstream 73029 8204822 ~ 8250935 (+) True AMCG00014299
AMCG00014306 mRNA downstream 131643 8263436 ~ 8321739 (+) True AMCG00014306
AMCG00014307 mRNA downstream 211208 8343001 ~ 8382284 (+) True AMCG00014307
AMCG00014308 mRNA downstream 254372 8386165 ~ 8401359 (+) True AMCG00014308
TU86046 other upstream 711610 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 778737 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 3476240 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 3476240 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 5417875 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 1871265 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 6205065 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 7543838 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 7543838 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 7997732 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile