RNA id: AMCG00014296


Basic Information

Item Value
RNA id AMCG00014296
length 1966
RNA type mRNA
GC content 0.44
exon number 7
gene id AMCG00014296
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8142189 ~ 8147008 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGCACTTCACAGACGGTCCCTAAATACAGCCCCGGCGGGGACGCGAAACGGAAACTCTCGAGAAAGCAGGCATTTGCACAGAGTCGCCAAGTCTGTGTTTTCATGTCTTCGCTCACAGGACCGAAGCTGGAGCGTCACAATTGCGGGATGGCTAACATTCCAGAAATTCCTCCCGGGACACCAACCCAGAGCTGCCCAGACTGGATGTCTCAGCTGCCAGAACAACTCTGGGATAAACCCCTATACCACCTTGCCATCCCTGGAAGCCATGATGCCATGAGTTACTGCCTGGACATGTGTTCTCCGGTGCAGGAGTCCGAGCCTCTCACGATCAAAGCCCTGGACTACATCATGCCCTGCTTCACACGACCCTGTCTTTACAAATGGGGAACAGCTCAGGCACACAGTATCGCTGAGCAGCTGGATTCAGGGATGCGGTACTTCGATTTTCGGATCACACACAAGAAGCACGATACCTCGGACAACCTGTATTTTGCCCATGGGGTGTACACTCTTATGACAGTGCAGGAGGCACTCAAAGACATCGCCCAGTGGCTGACATGCCATCCTAAAGAGATTGTCATTTTGGCGTGCTCCCATTTTGAGGGGCTGAGCAATGAGCTCCACGAGAACCTCGTTTTCTTCATGAAGCAGCTGTTTGGAGACAAAATCTGCCCCTATATGGAGCTTCAGGAGACCCTCACGCTGCGGAGCTTCTGGCGTCTGGGATACCAGGTCATAATCTCCTACGATGACAGTGCACTTATTAAAAGACACAAGGAGCTGTGGCCAGTCATCCCGTACTGGTGGGCAAACCAAGTGGATCCACAAGATGTGCTCCAGTATCTAgagcaacagaaacaaaagggACGACCAGGGGGATTCTTTGTGGCTGGTCTCAACCTCACGGAAAACACTCAGTATGTAATCCTGCATCCCCGTGCTTCACTTAAGACCATGACGCAACACAGTTACAGCTCTTTCTTGGAATGGATTGGCAAGCAGTCTCCTGGACCAGGCAaagcatgtttaaatataatttgtgagGATTTTGTCGGAATAAATAACTTTGCTTCCGATGTCATTCATCTCAACCAGAAACTTTTGGAACCAGATATTGTTACGCTCTCCTGacactgaaatgcttttttttttctctccttttgttCCCAGATCACTTTAGTATAGAAATATGAACAGGGAACAAAGCAATAGTAACTGCTTTAATTGTCAGCCGGAAACAAAACAGTTTCTACatagacaacacacacactctggtgTGTCTCAAATACGGGGATGTGCCGACTCATGTGGGTTAATTAACGCTTAGTAACTAAAACTGATAAAATAGCAGCATACCACTTCCTCTCTATCATcaaaaaaatgttgttaaatgCATAAGATATCATAGAAATGTACAGTCTATGTAGGAAATGAAAGAATAGGTTGTTTGCTTTGAATTCAGTCTTCCATGTATTCACAAAACTCTTTttactgtaatactgtacacTAATTCTCCCATGCATAATCATCACGAGCTGCTTTCAGAATGACACTAaggttttttttggtgttttataaGGGGAGTGATTAGGGGATATTTTCTGTAAGtattttcagaagaaaactGCAGAAGGTCACTTGTTTATTAGTCAGTCCTCTGTGTACTCTAAACTGATGTCCTTTGACATCAGCAAATCTTTATCGTGTGTCCTGCTTTTCATTCGGTGAATTAAAAATCCTAGAATACATAGAGAACCATGGCACAGTGCATCATAGGTGACTCTTACAATATCCTTAGTAGAATAAAACTGCAGCTATTATAGTGacatatgtaatataataatgtgtacacatgacatatgtatatactgCGTATTATCAAGATAGTAGTTTAATTAACTATGCCTTTATGTGGGAGACTGTCAGtgcagaattaataaaaaactgtGTAAAGTCTGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86291 lncRNA downstream 5995 8134903 ~ 8136194 (-) True AMCG00014297
TU86202 lncRNA downstream 267831 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 515814 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 676527 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 682300 7455978 ~ 7459889 (-) True G68874
TU86331 lncRNA upstream 79486 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 743548 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 851418 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1202780 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1442816 9589824 ~ 9590081 (-) True G69372
AMCG00014297 mRNA downstream 3401 8135222 ~ 8138788 (-) False AMCG00014297
AMCG00014291 mRNA downstream 82171 8020985 ~ 8060018 (-) True AMCG00014291
AMCG00014286 mRNA downstream 359187 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014287 mRNA downstream 390324 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014284 mRNA downstream 466931 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014295 mRNA upstream 1379 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014298 mRNA upstream 8924 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014300 mRNA upstream 19234 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014301 mRNA upstream 42015 8189023 ~ 8197625 (-) True AMCG00014301
AMCG00014302 mRNA upstream 112719 8259727 ~ 8260980 (-) True AMCG00014302
TU86293 other downstream 3063 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 718898 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 761409 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5313045 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 5498282 2641059 ~ 2643907 (-) False AMCG00014144
TU86302 other upstream 9221 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 236277 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1163443 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2649708 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 3513013 11660021 ~ 11662493 (-) False AMCG00014374

Expression Profile