RNA id: TU86291


Basic Information

Item Value
RNA id TU86291
length 727
lncRNA type sense_over
GC content 0.40
exon number 2
gene id AMCG00014297
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 8134903 ~ 8139126 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

caaaccagaggagctttgtGTGGTTTTGCTTGATTCATTTTAAGCAAACATAGGATCTAATGCTACAAATGAAAAGTACAGCCTTCTGTATGTGTGCttaaaattagtttgtttttctgcttggGTTTCAGTTATCAGCCCACTGAACCAAACACACTGGCCATATCAGCACTGAAAGAGCACGGCTTGGATGATCTGAGAAGCCGAATTGAAGAAGCCATCCTGAAAACCACGGGGAAGAAAATTCTGACAATTAAGGTGGATCTCAACAGCGCTCAGTTAAGCTGGCTGTACAAGGAGGCCACGGTGCAGGAGGTGGTGGTTCTGCCAGAAGAAGGAGCCGCTGACGTCAAGGTCATTATGAGCAATGCATCGTGGGGGCGATACAGGAAGCTATTCCAGTACTAGCAGCTCTGGCATCGACTAGTAACCCAGAATCCCTGTGTTGAAGCCTcatgttaattggatgattcATCGGCACACTTGTCAACATCAGTGTGATCAGAATTcttccacatttatttatttttcatgcattaagtgtttttgtttttttacccacATTCAGGGACTTTGTGAAATACTGGTTACGTTTCATTGTGCTGTAACCTTTCAAagattaatgtatataaaatagcTAAGCAGTTTACAGTAAagattatacatgtattttgtatacaaaataaagtggtttaaattattttcttttcattgcacACTTCTCCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86202 lncRNA downstream 260545 7874153 ~ 7874358 (-) True G68981
TU86117 lncRNA downstream 508528 7625985 ~ 7626375 (-) True G68905
TU86087 lncRNA downstream 669241 7465409 ~ 7465662 (-) True G68875
TU86086 lncRNA downstream 675014 7455978 ~ 7459889 (-) True G68874
TU86077 lncRNA downstream 693731 7440500 ~ 7441172 (-) True G68867
TU86331 lncRNA upstream 90300 8226494 ~ 8250561 (-) True G69086
TU86493 lncRNA upstream 754362 8890556 ~ 8890839 (-) True G69233
TU86513 lncRNA upstream 862232 8998426 ~ 8998626 (-) True G69250
TU86641 lncRNA upstream 1213594 9349788 ~ 9355238 (-) True G69352
TU86667 lncRNA upstream 1453630 9589824 ~ 9590081 (-) True G69372
AMCG00014291 mRNA downstream 74885 8020985 ~ 8060018 (-) True AMCG00014291
AMCG00014286 mRNA downstream 351901 7752906 ~ 7783002 (-) True AMCG00014286
AMCG00014287 mRNA downstream 383038 7731014 ~ 7751865 (-) True AMCG00014287
AMCG00014284 mRNA downstream 459645 7668553 ~ 7675258 (-) True AMCG00014284
AMCG00014280 mRNA downstream 554803 7569311 ~ 7580100 (-) True AMCG00014280
AMCG00014296 mRNA upstream 5995 8142189 ~ 8147008 (-) True AMCG00014296
AMCG00014295 mRNA upstream 12193 8148387 ~ 8155403 (-) True AMCG00014295
AMCG00014298 mRNA upstream 19738 8155932 ~ 8158488 (-) False AMCG00014298
AMCG00014300 mRNA upstream 30048 8166242 ~ 8186240 (-) True AMCG00014300
AMCG00014301 mRNA upstream 52829 8189023 ~ 8197625 (-) True AMCG00014301
TU86071 other downstream 711612 7417598 ~ 7423291 (-) False AMCG00014278
TU86038 other downstream 754123 7378088 ~ 7380780 (-) True AMCG00014271
TU85055 other downstream 5305759 2825562 ~ 2829144 (-) True G68088
TU84998 other downstream 5490996 2641059 ~ 2643907 (-) False AMCG00014144
TU84851 other downstream 5592206 2540317 ~ 2542697 (-) False AMCG00014134
TU86293 other upstream 1137 8137331 ~ 8139126 (-) False AMCG00014297
TU86302 other upstream 20035 8156229 ~ 8158590 (-) True AMCG00014298
TU86412 other upstream 247091 8383285 ~ 8384224 (-) True G69156
TU86630 other upstream 1174257 9310451 ~ 9317167 (-) True AMCG00014328
TU86854 other upstream 2660522 10796716 ~ 10798147 (-) True G69537

Expression Profile