RNA id: AMCG00014329


Basic Information

Item Value
RNA id AMCG00014329
length 2241
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00014329
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9443199 ~ 9458087 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACTTCCCTGGCTTTCTGGATTGTCTTGTTGTCTCAAATCCATGGATCCTGTGCAGAAGTTGGCAAAATGTCTACAATACCCAAACATCCACAAACGCAGTCGACAAATGAAGTCCAGGCCTTCCCTGATGAGGAGAAAAATAACCTTCCAGTTTTCACCATGAACTACCCACGCATACAGGTGCCATTAGAAATAACGCTGTGGGTGCTTTTAGCGTCCTTTGCGAAAATTgGTTTCCATGTTTACCACAAGATAACCATATGGATCCCGGAGTCCTGTCTTTTGATTTCCATTGGATTAATTGTAGGAGGAATCATGTACTCTGTGAAGGAAGTGCCTCCAGCTGTGCTGAGCTCGAATGCCTTTTTCCTGTACATGCTGCCCCCCATTGTACTTGATTCGGGCTATTTTATGCCCACCCGACCCTTCTTCCAGAACATTGGCACAGTGTTGTGGTTTGCTGTGATTGGCACCCTGTGGAACTCCATCGGAATCGGAATCTCCCTTTATGCCATCTGTCAGATTGAGGCCTTTGGTATCCAGGACATTAACCTGCAGGAGAATCTGCTCTTTGGCGCTATTATCTCAGCGGTGGACCCCGTGGCAGTGCTGACAGTGTTCGAAGATATTAACGTGAATGAGCAGCTTTATATCGTGGTATTTGGGGAGTGTCTCTTCAATGATGCTGTCACTGTGGCATTATACAACATGTTGACTTTTGTGGCAGAAATGCCTGAAGTGGAATCCATTGATGTCTTCCTTGGCTTTGGAAGGTTTTTCATTGTCGGCTTAGGAGGGGTGCTCTTTGGGTTTCTGTTCGGGTTCGTGGCAGCGTTTACCACCCGGTTCACCACAAATGTCAAAGAAATCGAGCCTCTCTTTGTCTTCATCATTGTAACGTGTGCAGTGACCATGAAGTACTATGTAGAGGAGAACGTGTCTCAGAGGTCCTGTTCGACTGTCAGGCATGTCATCAAGATGTTTGGCACTGTCTCCGAGACCCTCATCTTCTTCTTCCTGGGAGTTGTGACCATTACAAGTGATCACGAATGGAACTGGGCTTACATTTGCTTCACcatcttcttctgcttcttttgGCGAGGCATAGGTGTCCTTGTCTTAACACAGATTATCAACCCTTTTCGCACCATACCCTTTAACTTCAAAGATCAGTTTGGCTTGGCGTATGGTGGTCTTCGGGGCGCTGTGTGCTTCGCTCTGGTCTTTTTGTTGCCTCACAGTATTGGACGAAGGAATTTGTTTCTCACTGCCACCATTGCCGTGATCTTATTTACTGTCTTCATTCAGgGTATAACCATTCGGCCTTTGATTGAGTACATGAATGTCAGGAGGACAAACAGGAAACTAAATACTATTAATTTTGAAATCCACAGTCGGGTCATGGAGCACACAATAGTGGGTATTGAAGACCTGTGTGGGCAGTGGAGCCATTACTACTGGAAAGACAAGTTTAAACGATTTAATGACAGATTTCTTAGGAAAATTCTCATCAGGGAGAACAAGGCCGAGTCCAGTATTGTTGCTCTGTACAAGAAGCTAGAACTGCAGAATGCGATGGAGCTTCTCGATACAACTGGAGACATTAGTGCTGCTCCTTCTATGACTTCTCTACAGGACCCTAAACCTCCCAAACCAAAGACATTCTTACCGGACGAGCTGAGGAAAATGCATGAACTGTTGTccaaaaatatgtacaaaattcATGAAAGGACCAttgcatacacaaacaaacgTGCGCTGCCCGACGACTCAAAGACTAAAGAAATTCTTATCCGTCGCCATCTCAGCCTTAGAAGAAGCAGCAACGCAGAATCGGAGATAGACTATCCTTCTGCCAGACCCACCGCGCTGCCGAGAAGGGTGCAGCCGGGCAGGACATTGTCCCATGCAGGTGCCATGATGCCGCTCCGAAGACTGGACACTTTGACGGAGGCGGCTGACTACAGCTCGTCATCACAAGTGGAAGTTATAAATGAGGGAGGAAGTCGGAGGAACAAGGGTGCCTACAGACAGGGGTCAAGCGTGAGTGATTCTATGGTGCATGTGCCAAGATGGCGGTTCGGCCCTCCTGCAGACAGAGCCTCCAATGCCAATGAAGACCAGGAAGAAGAGGACCCTCGGCCTCCAGCAGGCTGGACACCAGAGCCTCACAGCCGTCGGGACAGAGGGGCCGACAACCCCTTGCTGAGAAGACCCAGGGACCCTTACAATCATTGA

Function

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006814 sodium ion transport biological_process
GO:0015299 solute molecular_function

KEGG:

id description
K14722 SLC9A2, NHE2; solute carrier family 9 (sodium/hydrogen exchanger), member 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86614 lncRNA upstream 66849 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 552365 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 707260 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1306989 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1428196 8014744 ~ 8015003 (+) True G69006
TU86679 lncRNA downstream 443363 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 516337 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 596404 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 597290 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 689892 10147979 ~ 10151913 (+) True AMCG00014345
AMCG00014327 mRNA upstream 82023 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014324 mRNA upstream 170144 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014322 mRNA upstream 271137 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014323 mRNA upstream 298773 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014321 mRNA upstream 312668 9089874 ~ 9130531 (+) True AMCG00014321
AMCG00014330 mRNA downstream 17322 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014336 mRNA downstream 345870 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014337 mRNA downstream 382936 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014334 mRNA downstream 456038 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014335 mRNA downstream 501146 9959233 ~ 9981593 (+) True AMCG00014335
TU86046 other upstream 2026605 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2093732 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4791235 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4791235 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6732870 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 544971 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4878771 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6217544 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6217544 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6671438 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile