RNA id: AMCG00014330


Basic Information

Item Value
RNA id AMCG00014330
length 2750
RNA type mRNA
GC content 0.35
exon number 5
gene id AMCG00014330
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9475409 ~ 9482055 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAAATAGATGGACAGTTCCATTTGGCAGTTCAATGTGTTTGGAGAGACCAGCACACGAAAGCCAACTGTGACAAGAACTCAGAACTCCTTCCAGCTGAAGACAGAAAGCAGTGCAGGGCAAAGCCAACAGATATGAAGCTTAGTGTTGCATTGTTCTTTGCGGGGTTTTTTGGAGCTCTGGGAACCGTGTTTTTCTTGGTGTCATTTGGGACGGATTACTGGCTCTTGGTGTCTGAAACTTGTTCACCTAATGAGACAGCAAGCAAAACAGTAACTGAGcgTGGAGATGGGGTATTGTCACAAAAGGACACTGATACGACCTTTTACCACGAGGGCCTCTTTTGGAGATGCACTTTTGGTGGAAAAATGGGAGAGGACAGCATGTGGAAGTTCTGGTTCAcCAACCAGCCACCATCAAAGGTCTGCTCACATGCCTATCTCTTTCCATTCCCAACTTCAGCAGAGACTAACAATTCCACGGCCTATTCTCCTGTCAtctaCCGAGGGTTTTGGAGTATCTTCATGCTTATCGGAGTGGCCGCTGTAGTCATAGGTGGATTCGTCATCATCTGTGCTGCTCCATTTGCCAGCCATAAGCTTTATAAAGCAGGTGGAGGGCTATTCTTAACCTCTGGGCTGTTCTTCCTTGCAGTCATCGTCATGTATGTCATCTGGGTCCATGTCTTAGATGGGCTGACTGAGTACACCATTCAAAAGCAGTCCCAGTGTAAAGACTTCACCGTCAACGTCAGATATGGCTTGTCCTTCATGTTTGCACCTGTGGGAGTCTTCTTTTGTCTGCTGGCTGGCTTGCTCTTCCTTTTAATAGGACGTACAGTGCAGTTGcattacaattaaacacaaaggcCATCGAGCAACGTGCACATTGGAACAGAGACTGGATGTTTTATGCTTGccaaaaaaaatgtgcatataaAATCAACATCATGGATATACGACAGGAGAATGATCATCAGATAGTTGTAGCGATACATGTACAGGTCCCAACTGAGTATTGTGAGTTagttcaaaacacaaatgtttattagTTTCAATATTGAATGTTCATTCATACCTATGTTccattaaaattacttttttgtctGATGTTGATACACACAGCACTTTTATAGCATGAAATTGAAGCATAACTGTTAATCTAAGGATGATACACCAGTTTTTTTGCTCTAACCAAATGGTtattttcagtcagtcagttgtgCTGTTGCTCCCTGATACAGtagaatatactgtatattaagtATATTATGTTTAGTCGTATTTAATTCATAACATAGCATAGCATTATTAGTTTGATTTACACAGAGCACTTGTGCTCTAACAATATTTTTAGTAGGTTTGTCACTTTCAGATACATTTCAGTCTTTCCTCTTAGTGTTCTGGGTTTGGGTGGGATTTGCAATGAAATTACATCATTTTACCAGGTGGATCCACTATAATCTTGATCGTTTTAGCATCCCAGTGCATTAACCCTTGGGCTGCCAGTGACTTGCCCATATATGTGAGTGCTGCTGTttgaatgcaattattttttaatgtttcttatttgtgtttagtttggcttcattttaatttaaaatcagtttcagaaaattacattacattattatgaattatgaatgatttcaattaattgtataatgtaCAACTGCAATACACAGTGCCTTCTTTGAAGAAGGATATATAGGATGAAGAACCAAagacaatttgtttttcaattgacACAGAGgaaattatgaaatgtatattttatgctttgtagtttttatttttatttggcaaTAAATGCCAACCAGCCtgtggtttaaataaatacaattccataattaacaaacatacagtgctttaagaaaatgtagttatgttatattataatattataataattattattttttgtaatttaattattcagttTGCTGTATAGTAAATTGTACAAATAGGATCAGGtcctggaaaaaaatgtttttttccttttctgtataAAGAATTGTAATGCTTCTGTATTAAaaccatcatttaaaaataggatttgataaacaaatactgtaagcttattttctatttgtgtattACTGATAGTTTaggtatatattgttttccacaTTGATTTTGTAGCAATTCAAGATCAATTTTAACGTTTAAATATGCATGGCTGTACAGTTaaagcaataaagaaaaaaataaagtatacatgtacatacctattttgcagttttacatTTCCAGTTTGAGGTAGTAGATTTAAACATTGTTCAGTGTTTTGCCTTTCACattgaaaatgcttttcttaaGGTACATGGGAAAAGATATATATGTAACCTCttatgttaattatatatatatatatatgtatatgtatgtatgtgtgtgttttgagtagactttattaaatattgacagTGCTGACTACTTACCTACAGTATTTGGTTAAGATATTCATCTACAGAGGTACggtaaatggaaaaatatttctAAAGCCTTCTAAAAGTTAAACTTCATTTCTTAATTTGGCTGAAATATAGACAGTGGGTAAATGGTAATCCATTTAATGTAACAATCTCAGAGATATATAAGGGATTTAGGATGTTTGATAATTGCCTAATTTAAGgttatagttttttgttttcatattctaTGTCGCTTTGTAAATTTGCTCATTTTTGgaaaggttagaaataatgattctGAATAATATAATGGTCTCTGGGGAAAAATTAAGGCATA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86614 lncRNA upstream 99059 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 584575 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 739470 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1339199 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1460406 8014744 ~ 8015003 (+) True G69006
TU86679 lncRNA downstream 419395 9901450 ~ 9910048 (+) True G69384
TU86698 lncRNA downstream 492369 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 572436 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 573322 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 665924 10147979 ~ 10151913 (+) True AMCG00014345
AMCG00014329 mRNA upstream 17322 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014327 mRNA upstream 114233 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014324 mRNA upstream 202354 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014322 mRNA upstream 303347 9157744 ~ 9172062 (+) True AMCG00014322
AMCG00014323 mRNA upstream 330983 9137031 ~ 9144426 (+) True AMCG00014323
AMCG00014336 mRNA downstream 321902 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014337 mRNA downstream 358968 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014334 mRNA downstream 432070 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014335 mRNA downstream 477178 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014338 mRNA downstream 511618 9993673 ~ 9994671 (+) True AMCG00014338
TU86046 other upstream 2058815 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2125942 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 4823445 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 4823445 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 6765080 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 521003 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4854803 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 6193576 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 6193576 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6647470 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile