RNA id: AMCG00014332


Basic Information

Item Value
RNA id AMCG00014332
length 1212
RNA type mRNA
GC content 0.52
exon number 5
gene id AMCG00014332
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9467324 ~ 9472259 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTGTCATCCGAAATGTAGTGCATTTCAGAGACCACTCAAACAGAGGCGTTTCATACAATGCATGTATGTTGTAGGATTCATGGACCTTTTTGGAGTCAGCATGATTGTTCCCCTATTGAGCCATCATGTCAAGTCCCTTGGGGCGAGTCCCACACTGGCTGGGATAGTAGGTTCAACTTATGGCATTCTACAGCTTTTTTCCAGTACATTAGTTGTAAgaATCTTTAAACATTCCCTTTCCATCTGCAGGGCCCTCTTGTCTGACTTGGTGTCAGAGACAGAGCGCCCCGTAGTGATGGGTCATTTCAACGCAGCTTCCAGTGTAGGCTTCATCCTGGGCCCGGTGGTGGGCGGCTACCTCACAGAGCACGAGGGCGGCTTCTACACATCGTCCTTTGTCTGCTcggccatttttgttttaaatgcagGTCTTGTGTGGATGTTGCCTTGGAACGATTCCTTAATAAAACTGGAGCAGACCACAATCCCAAGCATCGACAGTAGCAAGAGCGCCAGACAGAAGTACATGGTCAGTAACCACCTGAAAGAAGCTACAACTTCGGGTGAGAGTCACTTGCGGCCCGTGTGGAAACAGGTCTCCTCAGTTCTGCGGAAGATCAGCGCGCTGTCCTCCTCCGACATGTGGGATGTGTTCTTAGTCCGGCTCCTTATGGCCATAGCCATCATGCTGTACTACAGCAACTTCTCCCTGGCCCTGGAAGAGAGGTTCTCGCTGAAGCCGAAGGTGACTGGCTACCTCATCAGCTACAGCAGCACACTCGGAGCCCTGGCCGGGTTCCTGGTGGGCCCAGTGACCAAACTCTACAACAATGACATGTTGTCTATGCTGTTGCACTCCAGCATCCTCACCTGTTCCCTCATATTCCTGTACGCCACGGCCCCGAACGTGTGGCAGATCCTGCTCTGCTCCACGTTCTTTGCCATCTCCACCACGATCGGCAGGACTTGCATCACAGACCTCGAGCTGAGCCGTGGGGGGGCGCAGGCCAGTGGGACCTTAATAGGAGCAGGACAGTCAGTGACAGCGGTGGGGCGAGTGGTCGCTCCTTTACTCTCCGGATTTGCCCAGGAATTCAGTCCATGTGGCCCTCCAAGTCTAGGTGTTGGTCTGGCATTAGCAGCCATATTGCTTTTGATCTTCAAGATGCCACCGGATGCCagagttaaaaagaaaagtctgaATCTTTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86641 lncRNA downstream 112086 9349788 ~ 9355238 (-) True G69352
TU86513 lncRNA downstream 468698 8998426 ~ 8998626 (-) True G69250
TU86493 lncRNA downstream 576485 8890556 ~ 8890839 (-) True G69233
TU86331 lncRNA downstream 1216763 8226494 ~ 8250561 (-) True G69086
TU86291 lncRNA downstream 1331130 8134903 ~ 8136194 (-) True AMCG00014297
TU86667 lncRNA upstream 117565 9589824 ~ 9590081 (-) True G69372
TU86668 lncRNA upstream 118917 9591176 ~ 9591381 (-) True G69373
TU86677 lncRNA upstream 422467 9894726 ~ 9895580 (-) True G69382
TU86687 lncRNA upstream 429098 9901357 ~ 9912021 (-) True G69391
TU86688 lncRNA upstream 429098 9901357 ~ 9912021 (-) False G69391
AMCG00014333 mRNA downstream 49088 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014331 mRNA downstream 100288 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014328 mRNA downstream 150418 9305239 ~ 9316906 (-) False AMCG00014328
AMCG00014325 mRNA downstream 238697 9216869 ~ 9228627 (-) True AMCG00014325
AMCG00014326 mRNA downstream 319987 9144538 ~ 9147337 (-) True AMCG00014326
AMCG00014340 mRNA upstream 528875 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014341 mRNA upstream 555393 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014339 mRNA upstream 586009 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014346 mRNA upstream 720370 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014348 mRNA upstream 768747 10241006 ~ 10256375 (-) True AMCG00014348
TU86630 other downstream 150157 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1083100 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1308734 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1328198 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2044033 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 1324457 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 2187762 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18857480 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19917031 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22790908 32263167 ~ 32263427 (-) True G73047

Expression Profile