RNA id: AMCG00014335


Basic Information

Item Value
RNA id AMCG00014335
length 1970
RNA type mRNA
GC content 0.46
exon number 11
gene id AMCG00014335
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9959233 ~ 9981593 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTTTATCATCACCTGTAATAAAGACCCCGGCGTTGGAAAGCAGCCAAACCAGTCGCTCTCCCTTCGGCTTGGTTTCGAGGGGAAGATTTAGCATCTGACGTCACCGCTGCTCACGTATACGTGTGAACGTGAGTTGGCGTACGCTTGCGCCTGCGCGTTGTGGATTCATAGTGTCAAACATGGCTGCTTCCAGTGGCAGAGTCGTGAGGTCCTTGCTGAGGGGATGCTGTGGCTGTTACTCTGTGATAGCACCGTCTGCCAGAACAACTATAACTCGACAAAATCTCGCCTTTCCCGTGCTGGCACGGCTAGTGTACACCACCTCAACACTTCAGAGAAGGAACATAGCTGCGGAAGGTCCTGAGAAGTACACCGATGAGTTCATCAAGAAGCAGATCGAGGAGTTTAATATTGGGAAAAGGCACCTGGCCAACATGATGGGCGAAGATCCGGAAACGTTCACACAGGAAGACATTGACAGGAGCATTTCCTACCTTTTCCCTTCTGGGCTTTTTGAGAAAAAGGCTAGACCACTTATGAAGCATCCAGACGATATATTTCCAAAGCAGCGAGCTGTCCAATGGGGAAAAGATGGGCGtccttttcatttccttttctacACCGGAAAGCAGTCTTATTACTCACTCATGCatGACACGTATGGAAAGTTCCTAGAAATTGAAAAGTACCAAGATCGAATGAGAGCAAAGGGGCTTTTCTCAGAGGTTACTAAGGAAGTCACCCTTGCTGACAGCCGGTGGCTTTCCAAGGAGGAACTCGAGGAAATTCTTGTGGAACCCATTTCTGATCATGATtacacTCGTTTTGTCCAGCTGCTGGAGCGGATCCTGGCACAGCCATACTGCTCTATAGAGGAGGAATACATTCACAAGTTCAGGAGGCAATTGGAGGTGCAATCCAAGAAACAGAAGATTGAGCCGCTGCAGTATGACACTGACGGCATCGCCTTCAGCATGGGAGAAGGCCGAAGAAAGACTGCCACTGCTACCACAGTTGTTCGAGACAATGGCTTAGGGAAAATCTCTATCAATGGAGTTGATTACCTCCAGTATTTCCCAGTTCTCCAGGACAGGGAACAGCTGATGTTCCCCCTGCAGTTTCTGGGCCGGCTGGGCAGACATGACCTACAGTGCACTGTCACTGGGGGTGGGAGGTCTGCCCAGGCAGGGGCCCTGCGATTGGCCATCTCACGAGCTCTGCTGAGCTTTGTGGAGGAGAGTGAGGTGGAGACAATGAGGCAGGCTGGGCTGTTGACTTCTGACCCCCGGGTGAAGGAGCGGAAGAAGCCTGGGCAGGAGGGAGCGCGCAAGAAATTCACCTGGAAGAAGCGATAGGGCTGTGTGGACAAGCTGTCAGTCTCGACACTCAAGAGGTCCACATGCACACCTTCTAACAAtctgtggaaataaatatatttaaattaattctggaTACAGTCTGTTTACTGAAAACGATGCAATGATGAGTTCATTAACCCGTATTCCCCAACGTATGTCACGTGTTTCCAAATCATGAGAATTCACTAGAATAAATGTACGGTGTCTATGGCATTTGCAAGGTAGTTTCTTTTATAAATAAGCCATATGTTTCTTTTCCCTCACAATTTCCCAATTAACAAATGTAAACCTTTTTATCAGTTGGATATGCAAGGAGGGAAAAAGCAGTGTGAACACACTGTGAAGGGGAGGCAGATAATACCGCCAGGTGCCGATGTTTGTAATGACCTCAGTCAGTAGAAATGTTAGTATTAAAGTAgagttaaacacattttgacattacaatttaaaatcgattctgtactgattgtattactgcagttttttaataatgtaaaatgtttctcaTGTAAACTGTAACTTGAcctggatatgggtgtctgctaacTTACATTACACATAGAAAGATAAATAACCATCAAAAACATAGACaatcagtgtatttcatttgat

Function

GO:

id name namespace
GO:0006412 translation biological_process
GO:0005840 ribosome cellular_component
GO:0003735 structural constituent of ribosome molecular_function

KEGG:

id description
K02996 RP-S9, MRPS9, rpsI; small subunit ribosomal protein S9

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86679 lncRNA upstream 49185 9901450 ~ 9910048 (+) True G69384
TU86614 lncRNA upstream 582883 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 1068399 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1223294 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1823023 8133288 ~ 8136210 (+) True G69023
TU86728 lncRNA downstream 72898 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 73784 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 166386 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 242078 10223671 ~ 10224035 (+) True G69457
TU86811 lncRNA downstream 511554 10493147 ~ 10493396 (+) True G69499
AMCG00014334 mRNA upstream 42444 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014337 mRNA upstream 50971 9841023 ~ 9908262 (+) True AMCG00014337
AMCG00014336 mRNA upstream 150353 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014330 mRNA upstream 477178 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014329 mRNA upstream 501146 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014338 mRNA downstream 12080 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014343 mRNA downstream 33910 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014342 mRNA downstream 143561 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014345 mRNA downstream 166859 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014344 mRNA downstream 174872 10156465 ~ 10162165 (+) True AMCG00014344
TU86046 other upstream 2542639 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2609766 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5307269 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5307269 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 7248904 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 21465 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4355265 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5694038 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5694038 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6147932 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile