RNA id: AMCG00014337



Basic Information


Item Value
RNA id AMCG00014337
length 948
RNA type mRNA
GC content 0.49
exon number 11
gene id AMCG00014337
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 9841023 ~ 9908262 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGGAAGGACATCGACTGGGCCCAGAGGTGGGGGCGCGCTTGGCAGATCAAAGGGTCAAGCTCTGCGGGAGGGTCAAGGGAAACCCACAGCTCTGCCGATTCTCACCACCCAGCCTGAAAGGGTTTACAGAGGCGGGGGATTTGTGTGGGAGGGCCTCCAAAGCAAACATAGATCACCTCGTCAAGTTTCAGCCTATTGGCATTCAGGATATAGGAGGTGTACAAAAGAACTGGGGTGGAAAACCACCAGGAGAGatATTGTCACCAACGATTCAGTGGAATGCAATTAAGAAGCCTAAATTAAGTGGATTTGAGAAGGATCTAGTAGATCTTGTGTTATGGtcAACATATTTTGACAGAAGAATGAGAACAAAGACTGAAGACACAGGCTTTCTACTCCAGgcgtgcagcagcagcagcagccccactGACAACTGTGTGACAGACAGCTTGTCCAGTGCATGCAGAGGGGCTCTCAGTATTTACCTCACCTCTCCATTCGGGACCTCGTCACAGCTGCTTTCCAGTCGATCATCTGACCTGAGCCAGGAGGGGCTGTCAGACTGGACCTTCATGACGGTGCATTCCTGGGGGGAGCACTCTGGGGGGGTCTGGCAGCTTACTGTCTACGACAATGCATGTCTAGGTGATGTGAAATCCGAACCTGGTCCAGCATGTGAAACAGCTGAGACTGACAATTTGACTGGCTATATCACCAGATTCGGGCTCAAGCTCCTGGGGACATTTGAATCAGAGCAGTTTAAAAGGGAAGATGTTGAGCAGTTGAAAGAAGACATTGCTGATGCTGAGGGCAAGAAAACATCACATGTCATCcacaaggaagaaaaagaggaaaaggtGGCTAAAGCTTCATTTCGCAAACTTTTGAAGATCATGGATGAAAGCCAAATTCCCCTGATTCATCCAAAGAGTGAGGATGACAACTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU86614 lncRNA upstream 464673 9366537 ~ 9376350 (+) True G69326
TU86492 lncRNA upstream 950189 8890586 ~ 8890834 (+) True G69232
TU86463 lncRNA upstream 1105084 8734323 ~ 8735939 (+) True G69206
TU86247 lncRNA upstream 1704813 8133288 ~ 8136210 (+) True G69023
TU86229 lncRNA upstream 1826020 8014744 ~ 8015003 (+) True G69006
TU86698 lncRNA downstream 66162 9974424 ~ 10028351 (+) True G69400
TU86728 lncRNA downstream 146229 10054491 ~ 10054711 (+) True G69428
TU86731 lncRNA downstream 147115 10055377 ~ 10055733 (+) True G69431
TU86745 lncRNA downstream 239717 10147979 ~ 10151913 (+) True AMCG00014345
TU86759 lncRNA downstream 315409 10223671 ~ 10224035 (+) True G69457
AMCG00014336 mRNA upstream 32143 9803957 ~ 9808880 (+) True AMCG00014336
AMCG00014330 mRNA upstream 358968 9475409 ~ 9482055 (+) True AMCG00014330
AMCG00014329 mRNA upstream 382936 9443199 ~ 9458087 (+) True AMCG00014329
AMCG00014327 mRNA upstream 479847 9328690 ~ 9361176 (+) True AMCG00014327
AMCG00014324 mRNA upstream 567968 9259294 ~ 9273055 (+) True AMCG00014324
AMCG00014334 mRNA downstream 5863 9914125 ~ 9916789 (+) True AMCG00014334
AMCG00014335 mRNA downstream 50971 9959233 ~ 9981593 (+) True AMCG00014335
AMCG00014338 mRNA downstream 85411 9993673 ~ 9994671 (+) True AMCG00014338
AMCG00014343 mRNA downstream 107241 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014342 mRNA downstream 216892 10125154 ~ 10145702 (+) True AMCG00014342
TU86046 other upstream 2424429 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2491556 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5189059 4649200 ~ 4651964 (+) True G68475
TU85567 other upstream 5189059 4649200 ~ 4651964 (+) False G68475
TU84898 other upstream 7130694 2709024 ~ 2710329 (+) True AMCG00014146
TU86705 other downstream 94796 10003058 ~ 10008648 (+) True G69406
TU87778 other downstream 4428596 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5767369 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5767369 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 6221263 16129525 ~ 16132802 (+) False AMCG00014508

Expression Profile