RNA id: TU86735


Basic Information

Item Value
RNA id TU86735
length 2234
lncRNA type sense_over
GC content 0.37
exon number 3
gene id AMCG00014339
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10058097 ~ 10061230 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGGAATCCGTGCGACGGCGGAGCTCGTGTTTCTGGCATGtgctttttgtaaatatatttagaatataaacATTACAATGTCCGTGTTTCACGACGAAGTAGAGATAGAAGATTTTGAATATGACGAAGAAACGGAGACTTACTATTTTCCCTGTCCGTGTGGGGATAAATTTGCTATAACTAAAGAAGACCTAGAAAATGGGGAGGAAGTAGCCACCTGCCCAAGCTGTTCATTGATAGTCAAAGTAATTTATGATAAGGAGGAATTCATGTCTGGGGAAATCGTAGAAGCTCCTGCAACAAACAAAGTGGAGCTCGTGAAGAGCTCGTGAAGAGCTGATGGCGTACAGCGAACCGTCACTGACGAAATACTTACACTCCCGGAGGCAATCCTCTCCGATTGCTTTGGATCAGCAGGGGACAGATGCTACATCTCTGTAGACCTGATCTCACAGACTGTAAAGCAGGAACATTAAATATCCTTGGCTTGATGGACAGAAGATGTATAAATCATCAGAACTGCTATCCCAGACACTATAGAGGACAATACATGCCAATCAATTGGAGAAACAATTGAGTGTTGCTTTAAGCTTTTTTTACCATAATTTATTTAACGagtaaagcaattaaaatatgcaaaacttacttgttttgtttatgattgCATGGGAAAATCATCTGCAGTACTTCTTTGCAAGTATTTTCTTGcattaacaattttttttacaattgtgAGCAAAACATTCTGTTCCAAGTGTGTCAGTAGTTCTTCACATTATAGGgagattaaatataaatattgaagcTAAAAGGAAATTGTAATTAAACCTGCTTTGGAATGGCATGACTGGCATTACTGTAACTTGGTTCAACTatctcattttaattaacttaagcCAGTTTGCTAAGTTAATGGAAACTAGTCACGAATAGAAGTAATTTGTTTACTGTGAATAATCTCAGAATTAGAGGGGCCCAGCACACTCTGTGCTCTCTGAACTGACCACGGCAGTCAAGTTGcagatgacaagaaaaaaacatattggcCCATGGCTGGTTTAGCTACCATGCTTGCAAAAGAGTATGTGTAGGAAACTACTCTCCGAATCTCTCTCAACTTACTATTTCCCGATGAGTTCGTCATCTTAACAAAAAACACccgaagacctgcagcttcaaattcaagaactctcgAATGAAAGCAAGATAACTGGACTGAAAATGACCTTGGATAAAatcaaagtcatgtttaacagctttgttaaatcttaAGAAAGTTGAGGTAGATCAATGGGTACTGGAAGAAATCAAGATGCATTTCTAACTTGCACAAAAATCAGCACAGTTTTAGATATTACGAATCAAATCAAAAGAatagtgaaaatgggatggagtgcatttggaaatcTAGTAATTtgcctgaaaagaaaagtatctgatcagtgcatactaccagtgctcacttatgacCGTGAAACCTGGttacttaatgcaaaaatgatacagaaactgcagacgacgcaaagaagcatggaaagaagcttgaattaaaaaagagaaaaagagttaaaatattaaaatggcaatgggccacactgcactgcatggacacattgcaagaagaacagatcaaagatggacaaaggtaGCTATCAAAtcccaagagataaaaaaaatagctaGAAGATGggacaattaaataataaactttgcaggcatgacgtGGAAGCTATAGATTGACACAAGTAGAAACATCTTAGGGAGGCCTACATCCAGCTGTGGATCGATTATAGGATGATGATGAGATGTatacttttcttttacatttttcattttcaatttataCCAGGTTTTGTGTTCCTTAAAAATTGGTGTATAAGCATAGAAatgttatataattgtattacccCTAAACTACCACATGGTGGAACTGTATTCCTAATGTAACAATGTTTGGGCCCTCAGTCCTCAGTCATGAGAATttgcatgctttttgtttttattgtgaagcaGTTGTGAACTGCCAAAAGCGAGGATATACATAGGGTGCTTATAGTGATACTCATATAGGAAGGACAGAAGTTTTACACTACAAATAAGAATCTTGGTAGTTTGGTACTCTACATTTCTGAATAGATGTACCTATCCTCTTTGACAGTATGCTGATATGCAGTACATATATAACGTTGCGTCCGTGACACAATAGTGATTCAAAGAGATGCACTAAACCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86727 lncRNA downstream 3822 10053737 ~ 10054275 (-) True G69427
TU86723 lncRNA downstream 40346 10015490 ~ 10017751 (-) False AMCG00014340
TU86693 lncRNA downstream 122699 9935175 ~ 9935398 (-) True G69396
TU86691 lncRNA downstream 140762 9916845 ~ 9917335 (-) True G69394
TU86687 lncRNA downstream 146076 9901357 ~ 9912021 (-) True G69391
TU86793 lncRNA upstream 276795 10337887 ~ 10340946 (-) True G69483
TU86807 lncRNA upstream 359088 10420180 ~ 10479009 (-) True G69495
TU86840 lncRNA upstream 619978 10681070 ~ 10681292 (-) True G69523
TU86845 lncRNA upstream 678324 10739416 ~ 10739930 (-) True G69528
TU86847 lncRNA upstream 705508 10766600 ~ 10768258 (-) True G69530
AMCG00014341 mRNA downstream 14531 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014340 mRNA downstream 40653 10001134 ~ 10017444 (-) True AMCG00014340
AMCG00014332 mRNA downstream 585838 9467324 ~ 9472259 (-) True AMCG00014332
AMCG00014333 mRNA downstream 639861 9373456 ~ 9418236 (-) True AMCG00014333
AMCG00014331 mRNA downstream 691061 9358847 ~ 9367036 (-) True AMCG00014331
AMCG00014346 mRNA upstream 131537 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014348 mRNA upstream 179914 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014349 mRNA upstream 238911 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014347 mRNA upstream 257152 10318244 ~ 10328231 (-) True AMCG00014347
AMCG00014354 mRNA upstream 464521 10525613 ~ 10526969 (-) True AMCG00014354
TU86630 other downstream 740930 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1673873 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 1899507 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 1918971 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2634806 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 735624 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 1598929 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18268647 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19328198 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 22202075 32263167 ~ 32263427 (-) True G73047

Expression Profile