RNA id: AMCG00014347


Basic Information

Item Value
RNA id AMCG00014347
length 4313
RNA type mRNA
GC content 0.41
exon number 10
gene id AMCG00014347
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10318244 ~ 10328231 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGGGAATTGTATAAAGTATAAATCTGAGTGAAAATGCAGCACTTTTTAAAAGTCTAACAGAGAAACACTgatatttagttaatttataaacTATGACACTTCGTATATTATCTGCTAGTAACCTGCGCATCAAGGTTTTTAAGTGTTAACAAGCAAAGCCTAGGCCTGGCTATTGTTGAGTGCTTGATGAAAAATACCAAACCattagcagtgtttttttttttttttttctctcttcctttgtTAGATTCACTTCACAAAACAGAAGGCTCTGGTGAATGAAACTGCagatattaatacaaaatccaTATGTCATGGTAAAGCTGCAAGGTTCAGCAATCCACATAACATCTGAAGGAGGGCAGGTGAGCACTTTCTTTGGACTATACCTCCAGGGTGACGAGATGGCCTCTTTCCAGCCCACAGTCATCAAGCTGAGCAAGCAGGAGGGCCAGAGCTATGGCTTCTTCCTGCGTGTGGAGATGGGGACGGAAGGGCACCTCATCCGCTGCATCGAAAAAGGCGGATTGGCTGAGCTGGCAGGCCTGAAGGATGGTGACCGAGTCCTGAGAGTCAATGGGGTCTTTGTGGACGATCAGGAACACGCACGGGTGGTTCAGCTGGTTAAAGAGAGTGGACAATCAGTTACCTTTCACATGCTGGATGAGGCCACCtatgaaaaagcaaagaaaagtgGCATCAACCTGTCTGGAGTGGATGAGTCCAGGCCAGCCCAGCCGCCATTGATGAATGGGGTGGCAGGGTCAGCTCTGAAACCAAAACTGTGCTATCTGGTCAATGTGAAGGAGGGGTTTGGATTTTCACTTAAATCAACAAAAGGGTACCAAGGGATGTTCTTTACTGATGTGAAACCCTCTGGAGCTGCTGCAAAAGCTGGAGTTCGAAACAATGATCGGCTCATTGAGATTAATGGTGAAAATGTAGAGAAGTCCACTCATGATCAGATTGTAGCTAAGGTGAAGGCCTCTGGCAAGAGTGTCACTTTCCTAGTTGTGgatgaagaaacaaacacacatttcagaaacaaaaatctgaaactgGGGGCAAGCCTTGCCACTGTGAAGCATCTTCCACATAAACCACGCATTGCTGAGATGACCCGGGGACCAGAAGGATACGGTTATTACCTGAGGGCTGAGAAAAAACGACCAGGTCACTTTATTAAAGATATCGATGCAGGAAGCCAAGCAGAGAAAGCTGGTTTGAAGGACATGGACCGACTGGTGGCCGTGAATGGAGAGGCAGTAGATTCTCTTGTACATGATAAAGTTGTAGAGAAGATAAGAGAGTGTGGCAACAAGTGTACCCTGTTGATTGTGGACGAGGAAACGGACAACATTTATAGAATGGCAGGTGCTTCTCCTCTTCTATTCTGGGAGGAAATGAAGGATTGCTTCGATTCTGCACCCGAGAAAGTCCGCCCCACCCATCAACAGGAAGCCCAGCAGAGTTCAGCCGTTCCTGTCCAGCTTCCCTCACCAACACCTCCCCCTCCCAGCGAAGAGCAGAAAGACTACAAACCCAAACTCTGCAAGCTGAGGAAGACCACCGGGGGCTTTGGTTTCCACCTCaatgcaattcaaggcatacaGGGACAGTTTGTCAAGGagGTGTTGAAGGGAGGCCCGGCTGATGAAGCGGGCCTGAAGGACAACGATATCCTGATCGAGGTGAATGGGGTCAACATCGAAAACTGCAGCCACGATGATGTGGTGGGGATGATCAAGAGCAGCGGGAACAGCCTGGTGATGTTGGTGGTGGAGAAGGAGGCCTATGACTACTTCAAGGCCAAGCAGATTCCCATCACCACTCTCCTGTTAGGGATGTCTTTGAGGGAAGTGACCCCTACTCCCCCCAAGCCAGCTGAGCCCCAGAAGGAAGAGaaggaagaagaggagaaacaagaagaggaaaaagaggagaaacaagaggaggaagaagaggagaaagaaaaggaagaggaagaggaagaagacgAACCTGCACGACCAGCTACCCCCCCAGAGACCAGGGATAGAtcgGACTCATCCTCCTCATCCTCCACGGATGAGGATGAAAGGTTCTGAAGAGGAACACCTTCAAAACTATCTCAGATTAGTATGCCGACTTTGTCTTAATGTTAGCTGAAGTTTATCTGGTCTCTCTAAGCTGTGAACAAATCAAAGCAGAGACTTAAACAATTTCTTATATGGCTCAGTGCAGAGTTGtggaatatttaaattaacctttACACTTTGGTACACCTGTAAAAACACTGtggatgtatttttaaaaagccattgTGTGATAAgataatgcatatatacatatacactctgCTTCACAGTCCACTAAAGCACCTATTGCGTGTTTATGTATATGAGTACGTGTATATGTAAATACCCCAATTCAATCGCACTGTATGTACATTGCATTGTAAACTGCTTCACAGGATTAAGTATCTGgagtttctgtatttaaaccatAAACTTGTAATGCTTCATGACATTTCAAACTATCAGCTATAATGTCATGATCTTTACAAACCCTCTGTGGGCAGATTATCTATACCAGGACATGAGGCTGATTTTGTCATTTAGATTTTACCTTAACTTCAAGAGATGTTTAATTGCCtaaatagtattaaaataagCCAATTCAGAAATGGTGCAATTAAACCTCCATTTTGAATACTCCAGCTAGTCTGGACAAATTCTTGGCTTTCCAATGTTAACAAACTCTCTCCTATACAAGAATCACCTGCAGGTGTATCCAGTTGTATTCATGTTGAGTTGAGCTGCATTTACCATATTAAATGTTACTCtacaaacatttatattgttatgtaTTGACATCTTGTATTGacaaatacaaagcatattAGGGCCACGTagggagtgttttttttttcctctctcaaaAATGGGGTGCACAGGAGGAGGATATATTCTGAGATAAAAGTCCCTACATGGCCCTAATACACTTTGGTAGAAATTAACCTTTGTGATGTGCACAATAGCTTAGGTTATTCAGAATTCACATTTCAGCTGTATCAGTACATCTGCAACAGCAGGGGTCAAAGAGCAAAGTACTACATTCTCAGATAATGCATTCTCTGAATTGTTGCTGTagcatttattgtttaaattgctCAACAGCATATTGCAACAGCCAGTCAGTGTCAAGTCAGCTGCAATACATCCGCTCACAGAACAGATGGAGAAAAAAGTACAACCCTTATATCTGAGAAGGTCATATGTTTGTATTATAGCAAACctgctttaatatttttttgtaaattcttGAATGTGCTGGATTGGGCATTTTGTCTCTTCTGTACTGACAATTTACAAACGCATAACCCCCCCACCAATACATTGTCGTAGCCTTGTTATCCATTTACAGGATCATGGATAACACAGAAAAGGAAACCTAACTGCTTTTATATATGCGCATGCAGACTTGTAGTCAAGTCACGATGATCTGAGTCCTTGATTTGAGACTCAAGTCTAaagttgaatttaatttatgaacAACACTTCAGAGAAAGCCCAGACTACAAAGATTAGTTGGCCTGTTTCTCcttgatttaaatttaacattatCAACATGAAGGAAAACAGAAATCTAAAGAGACCATTTCCACTGTCAAGTTTCCTAATGATGTAAATAACACTAGTTAATGAAAGTAATCAAAATTACATTGTTctatacaaatgcaaaattcTTGTAGTTGCCCTGCACAATGTTGTATATTATACAATCATAGCTCTCATTGGGTGAGTCTTACACATTGAGCCTCCATCTCACGCCTTGTTAAAAtctaattcattttcaaataaataagcttTGTGCACACCCCTCCACCAAcatattacattgcattttagtGCTTGAAAACCCAGTAAGCCTTAGACAATGACTTCagccaaataataaataataataaccgtGCATTTCTTTCATTAACTCCTGTTGCCGGACTCGAGTACAACAAGTCTGATATGCACACAAAGTTTTTCATCAATTAcaaatttaaagattaaaaagttagttaaaaatcacatttcccGATATTATATAAAAGTCTCACCTCCTTTGAACAAGATTTCTCATTGCAAGAACCGTAGAAGGTGAAGAAATAGTGCAAAAGTCTTCTACACATTCAGGAGTTACGTGCATGAATCTTATGAGTATGACCAATACACTCCATCGTTACTACACTTGTGTTGTTTACTACTGTGAAAACTGACTGTTATTAAGATGAAAATGGTTAAATAGCTCACATCATTATAGAACTCCCAGGAGGCTCT

Function

GO: NA

KEGG:

id description
K24057 PDZK1, PDZD1; DZ domain-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86735 lncRNA downstream 257152 10058097 ~ 10061092 (-) False AMCG00014339
TU86736 lncRNA downstream 257152 10058097 ~ 10061092 (-) True AMCG00014339
TU86727 lncRNA downstream 263969 10053737 ~ 10054275 (-) True G69427
TU86723 lncRNA downstream 300493 10015490 ~ 10017751 (-) False AMCG00014340
TU86693 lncRNA downstream 382846 9935175 ~ 9935398 (-) True G69396
TU86793 lncRNA upstream 9656 10337887 ~ 10340946 (-) True G69483
TU86807 lncRNA upstream 91949 10420180 ~ 10479009 (-) True G69495
TU86840 lncRNA upstream 352839 10681070 ~ 10681292 (-) True G69523
TU86845 lncRNA upstream 411185 10739416 ~ 10739930 (-) True G69528
TU86847 lncRNA upstream 438369 10766600 ~ 10768258 (-) True G69530
AMCG00014349 mRNA downstream 16883 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014348 mRNA downstream 61869 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014346 mRNA downstream 120493 10192629 ~ 10197751 (-) True AMCG00014346
AMCG00014339 mRNA downstream 257014 10058268 ~ 10061230 (-) False AMCG00014339
AMCG00014341 mRNA downstream 274678 10027652 ~ 10043566 (-) True AMCG00014341
AMCG00014354 mRNA upstream 197382 10525613 ~ 10526969 (-) True AMCG00014354
AMCG00014353 mRNA upstream 324048 10652279 ~ 10708018 (-) True AMCG00014353
AMCG00014358 mRNA upstream 571777 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014359 mRNA upstream 633018 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014360 mRNA upstream 646234 10974465 ~ 10991144 (-) True AMCG00014360
TU86630 other downstream 1001077 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 1934020 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2159654 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2179118 8137331 ~ 8139126 (-) False AMCG00014297
TU86071 other downstream 2894953 7417598 ~ 7423291 (-) False AMCG00014278
TU86854 other upstream 468485 10796716 ~ 10798147 (-) True G69537
TU87063 other upstream 1331790 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 18001508 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 19061059 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21934936 32263167 ~ 32263427 (-) True G73047

Expression Profile