RNA id: AMCG00014351


Basic Information

Item Value
RNA id AMCG00014351
length 3031
RNA type mRNA
GC content 0.38
exon number 14
gene id AMCG00014351
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10308422 ~ 10318002 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TTAGGCTTCAACTAATGACATATGCGCGCACCTTCAACTTGCGTGTATTTACAATGGGAGAAGCCGGAGTtagaagtgtttttatttttcagtaattcACTTCTATAAACACACGGCTAtctcattttttaaaagatcaCCCCTCAGTCTCGACGTGGATTTTGTACTGCACTGGTCAAGATGTCTTTTCTCGTTGACTCCATAATAATGATCACTTCCCAGGTGCTATTCTTTGGCTTTGGGTGGCTCTTCTTTATGAGGCAGTTATTCAAGGACTATGAGGTTCGCCagtatattgtgcaagtagtgTTCTCTGTGACCTTTGCATTTTCTTGCACTATGTTTGAACTCATTATCTTTGAGATACTGGGTGTTTTAAGTAGCACTTCTAGGTATTTTCACTGGAAATTGAATCTGTATGTCATTTTGTTGGTCCTTATATTTGTGGTACCTTTCTACATTGGATACTTTGTGGTCAGCAACATTAGATTATTGCAGAGACAGAAGCTTCTGTTTGCCTGTGTGGTGTGGTTTACCTTCATGTATTTCTTCTGGAAGCTCGGTGACCCATTTCCCATTCTTAGTCCAAAGCATGGGATCCTGTCTATAGAACAACTCATCAGTCGTGTTGGTGTCATAGGAGTGACTCTCATGGCTCTGCTCTCTGGCTTTGGTGCTGTTAACTGCCCTTACACTTACATGTCATATTTCTTGAGGAACGTGACAGACAGTGACATACTGGCCTTGGAGAGAAGGCTGCTCCAGACAATGGACATGATAGTaagcaaaaagaaaagAATCGCTGTGACACGAAGGATGATGTACCAGAGGGGAGAAGACCAGAACAAACAGACAGGCTTCTGGGCAAGGATAAAGAGTGTCACATCCTCACCTCCAGGCAGTGAAACCTTGACTGGGTGGTCAGATCTGACTCTGATTCAGCAGGAGGTCGATGCCTTGGAGGAGCTCAGTCGACAGCTCTTTTTGGAAACTGTTGATCTACAGGCTACCAAGGAGAGGATTGAGTACTCCAAAACATTTCAGGGGAAGTACTTCAACTTCTTAGGTTACTTCTTCTCCATATACTGTGTCTGGAAAATCTTTATGGCCACAATCAACATTGTTTTTGATCGTGTTGGTAAAACAGACCCAGTGACCAGAGGAATTGAGATCACGGTCAACTACCTGGGCATACAGTTTGATGTGAAATTTTGGTCGCAACATATATCCTTCATCCTAGTTGGAATTATTATTGTGACTTCTATCAGAGGCTTATTGATAACACTTACCAAGTTCTTCTATGCCATTTCAAGCAGTAAATCTTCCAATGTCATAGTACTGGTTCTTGCACAAATAATGGGGATGTATTTTGTGTCGTCGGTGCTGCTGATGCGCATGAGCATGCCCTTGGAGTATCGGACCATCGTGACTGAGGTGCTGGGGGAGCTGCAGTTCAGTTTCTATCATCGCTGGTTTGATGTCATCTTCCTGGTCAGTGCTCTGTCCAGTATCTTGTTCTTATATCTCGCACACAAGCAAGCGCCAGAAAAGCACATGGCGTTGTGATACTGTGAGTATCTCAACAGTAGAGCAACTGAGAGAAGAACTcaggtgtgtatatattataatatacacacaaacacaccatgAGCTGTTCCTGAATCAGGAATAGCCTTTTGCAatcagttattgtttttttcatgttgtgtaAGACGAGGgagatatacatttattataagggatttcatttttatattgttgtttgtttcttaattaactGTATTTGCCCTGTTGGAATAAATAATGCTCTCCATTATAATATACTGCCCTTTCAGCCTGTGTGTAATggcaattaaatgtatgcacttaatgtatttgaaacctTTGTTATCcagtattgttttcttaaattacatATCTTAAGCAAGACAATTGATGTAAGTTATAAGCATGTTTACAACGTGATGACAAAGCCTGTTAAAATTCACATACCTAGCATTTAAATTGCAGTTGATAGTGCAGTGCATCGTAAAGTGGCCGGGTAGAGAGTTTAGCTTATTTGAtttagtgtgtgtatgtcatCCCAATGTGAAGAGGTGATCCTATCTGTAACATGTATGtaattatatgtttaatatatttatctgAATAGTTCAGAAgtggaagaaaaatacaataaatatataggaACACAAtctaacattaaaatatttcaaacccTACAGTTTATTAActatcttaaatgtatttttgtatgctaTGTGTTTAATGAGATCCATACATATCTGGTATATCACAAGTTAGGAAATCAGTGTAGTAACTTGATTTGGTAGCTGACAATTAAgttttatgattaaaaaaaaaaaattcaactgTCCAGTACAGAATGCATtagtgcatttttttatttttttttgagGTCTTTAAAGGACTGGGAACCAGAAAAATATGGTACCTAAATGCACCCTTTCTTAAATGCAACTTTTAAATCCCATGTGGGCTTGGagctcttttttatttatcattggggggaactaaataaatgaagtgaTTTCATGCATTTGATCTTTCTGTTCTTTGTGGCGTCTGTTGGGGTAATTCCGACCAAGGAACAACAACTATATTAAACTGGAATAGGGGTTTTGTTTTCGATTCAGATAACACAACTGCATTTTTGCATTATTGTCTGGctgtaatatgtatttcatCAATTGTTCAAACATTTGTTATCTGTAATGGAGGAGAGAAATGTCTTGTAATCTCACAATAGGTGTTTTAGCAAACTGAGAAGTTACACGAGCATGAGAACTAACATGCTCAAAATTAAAGATCATAATGTATCTTATGCCACACAAAtacctttctttgttttcaagCAGCAGGCCTTATGGCCTTTTGCTATTCATAACCTTTCCAGAAGCCACAGAAAACAGGTAGTATGATATGCACTGCTGTACAAAAGTGTTAGGCAGTTTTCTGTTGTGATGagtaagaaaactaaaactttgtgttaaatgcaaaaacacCAGAA

Function

GO:

id name namespace
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0015031 protein transport biological_process
GO:0000139 Golgi membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005244 voltage-gated ion channel activity molecular_function

KEGG:

id description
K22193 GPR89, GPHR; golgi pH regulator

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86759 lncRNA upstream 84387 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 156509 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 252689 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 253711 10054491 ~ 10054711 (+) True G69428
TU86698 lncRNA upstream 280071 9974424 ~ 10028351 (+) True G69400
TU86811 lncRNA downstream 175145 10493147 ~ 10493396 (+) True G69499
TU86857 lncRNA downstream 519202 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 641324 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 903068 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 1323081 11641083 ~ 11641452 (+) True G69681
AMCG00014352 mRNA upstream 66161 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014344 mRNA upstream 146257 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014345 mRNA upstream 157392 10148452 ~ 10151030 (+) False AMCG00014345
AMCG00014342 mRNA upstream 162720 10125154 ~ 10145702 (+) True AMCG00014342
AMCG00014343 mRNA upstream 236821 10015503 ~ 10071601 (+) True AMCG00014343
AMCG00014350 mRNA downstream 34843 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014357 mRNA downstream 347391 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014356 mRNA downstream 403082 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014355 mRNA downstream 448634 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014362 mRNA downstream 743593 11061595 ~ 11086602 (+) True AMCG00014362
TU86705 other upstream 299774 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 2891828 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 2958955 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 5656458 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 4018856 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 5357629 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 5357629 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5811523 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 6147679 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile