RNA id: AMCG00014355


Basic Information

Item Value
RNA id AMCG00014355
length 2943
RNA type mRNA
GC content 0.51
exon number 12
gene id AMCG00014355
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10766636 ~ 10801310 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGTGGAGGTGCTCTTTCAACACGAGCGGGCCGAATGCGTGCAAGAGGGAGTCACTATGGAAACACTACATTCTCCAGGCAACCAGTCACCAgtcctggattttttttttcagAAACCCCACGGCCTGTTGTCAGTGCTGGATGAAGAGAGCCAGGCGCTGCGCCCTGCTGAACAGAACCTGTACAAGAAGCTGCAGTCTCAGATTGAGACATCCAACGTGAACGCTGTGTACCTGTCTACTAAAGATGGGAATGGCAACCCAGCACCAAAGGATCAAGGCCCCTCGTTCACTGTCATGCATTATGCAGGGAGGATGTCATATGACCTCACAGGAGCCCTAGAAAAGAACAAGGATTCCCTTCCACAGAATATCCTTTTTCTGATGAAATCCAGTGAGAATGTGTTCATCCATCAACTGTTCCAGTCCAAGCTGACACAAACAGGCTCCCTTGTTCCTCCCTACCATCGCCTTAAGCTCAGAGGACCCAAATCTGCTCTGCTTATTCAGAAAATGACATCACCTTCCACAGCCCGAGAACCAAAGAAATATCTGGACCTCAGTAAGcTTATGAAGAAAAAAGGGGCAACTTCATTTCTTCAGAGGCTTGAACGCTGTGGACCAGTTACTGTGGCTGTTCAActcaggAATTCACTTGCTGATATTACTAGTAAGCTGCAGAACTGCACTCCACATTTTGTACAGTGTATAAAACCCAACAACTCCAGGCAGCCAGATGTGTTTGACAATTTCTATGTGTCCACTCAACTCAAATACATCGGGGTGTTGGAGATGGTGAAGATGATCCGCTATGGCTACCCTCTGAGGCTCTCCTTTTCTAGTTTCCTAGCAAGATATAAGGATTTAGCTGACATGGTACTTGGCGACAAGAGAAAGTTGTCATCTGAAGACAAGTGTCGCCACATTCTCCAGCACTGCAAGCTCCAAGGGTGGCAGATGGGGCACAGCAAGGTGTTCCTGAAGTACTGGCAAGCTGACCATCTTAACGATCTCTGCCTCCAGCTCCAGAGGAAAATTATAACCTGTCAAAAAGTTGTGAGAGGGTTCCTCGCACGCCAAAGGCTCCGGCGCAAAATGAGCATCAGACAGCAAGAGGTCAGCTCTGTGCAAGGCTTCCTACAGGACGTGGAAGATATGGGTCTGAAGGCATACGATGGCTTGGTGATCCAGAACGCCTCCGACATTGCTCGGGAGAATGACCGCCTGCGCAACGAGGTGAACGGGATACAGCTGAACGAAAAGCTGGACAACACGGCAAAGGAAGAGGAAGGAGTGAAAAGAGCCGGAGACAAGTGCGGAAAGGTCAGTGAAGGGAGCTCTGAGGGATGCCGGACACCAAAGCACTTTCATTCCAGTTCTGTGCCCATCCCCATGGCCGTGGACAGCTTGGTACATTCCGCCGCCGGGTCATCAATCAAATCCCCCTCCCTGCAATCAGTGTTCAGCATGGATGACAGCAGCTGCCTCCCGTCACCACGGAAACAGCCTCCTCCCAAACCAAAGAGGGACCCCAACACCAGACTCAGTGCTTCGTATGAAGCCGTTAGTGCCTGCCTGGCAGCTGCCTCTAAGGAAACATCAAGTGAAGCTCTTTCAAAACCAAGACCTCATAGTGATGACTACAGCACAATGAAGAAGATTCCTCCTCCAAAGCCAAAAAGAAGCCCCAACACAAAACTGAGTGGTTCCTATGAGGAGATTTCAGTTCGCAAACCTACAGAAATTAAGCTGTCTTGCTTTACTAAGGGAGGACAATGTCTGGGAATGATCCAAAGGGCAGCATCTGCTGACGGCCCACAATACGGTGTGCTCAGTCTTTATCATTcccaagaggaggaggaagctgTCTACATCGAAATGATTGGAAATGCTCGAGCCATGAGTCTACCTGAGGTGGACGCCCCAGACCAGGGGGAGTCTGTCTATGAGGAAATGAAGTATTTTCTGCCTGAAGATGGCACAACGGCTAAAATACTGCTTTCAAAACCAGAAAGGTCTCCTCAGCAACTATATGAGACAAAAAAGCTAGTAATAGTGGAGCATTTTCATCCAGGTCATGGAGGAAAGACATATTGCAAAGATGGCACCTGTGACATTCCCCCTCCATTCCCCAATCTGCTCCCTCACCGGCCACCTCTGTTAGTTTTCCCCCCAACCCCCGTCACTTGTTCTCCCGCTTCAGACGAATCCCCTCTAACACCCCTGGAGGTGAAGAAGCTACCTGTCCTGGAGACCAACCTGAACTATCCGGGGCAGTCAGAAGGCAACAGCCCCCTATCTCCTCAGTGCGCACGACACCAGAAACCAGACAGCGAGAGACCCTCGTCACCCAGTCTCTCAGTGTTCAATATGGCGGACAAATCTACTCCACCCCCTAcacctcctcctccgcctcttctgcctcctcctccagcaATGCCCCCCCCTTACCGACCTCCATCGCACTTCCCTTTCCCACCTGAGGCCAGTGTTTTGGCCTTGGCCAGAGCAGCATCGGTCTCCAACTCAGATTGTCCGAAGGTCCCTCAGAAGCTGGGCCACAGTCTCTCAGACGCGCCCTCGGGctgcaacaaacctccgtacTCCCCGGTAAAGACCCAGAGGACGGAGCCCAGGAAGTCACACTCCTGCTCCTCATCCCCCCTCCCATTTAACCCTGCTAATGCCAGGTCCCTGACCAGCCCCCTCGATGAACTGACCACACTCTTCAGCTCGGGACGAAGCCTCCTGAGAAAGTCCGCAGCTGGACGGAAAATAAGGGAACCTGAAAGATTCAACTCCAACATTATCATGCCCGGCCGAGAGGAGCCCAGTGACACGTCACCTCAACTCCAAGATAAAAACGCCAATAACCGCGTGAATACCCCGTCATCAACTGCACCCAGTCCTGCATCTATAGAGAATGGAAATCAGCTCTCAAAC

Function

GO:

id name namespace
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
K17481 MYO16; myosin XVI

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86811 lncRNA upstream 273240 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 542601 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 614723 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 710903 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 711925 10054491 ~ 10054711 (+) True G69428
TU86857 lncRNA downstream 35894 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 158016 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 419760 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 839773 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 918008 11719318 ~ 11722767 (+) True G69722
AMCG00014356 mRNA upstream 12489 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014357 mRNA upstream 94898 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014350 mRNA upstream 386215 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014351 mRNA upstream 448634 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014352 mRNA upstream 524375 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014362 mRNA downstream 260285 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014363 mRNA downstream 296257 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014361 mRNA downstream 324089 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014369 mRNA downstream 376651 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014370 mRNA downstream 591079 11392389 ~ 11393405 (+) True AMCG00014370
TU86705 other upstream 757988 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3350042 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3417169 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6114672 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3535548 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4874321 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4874321 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5328215 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5664371 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile