RNA id: AMCG00014356


Basic Information

Item Value
RNA id AMCG00014356
length 1881
RNA type mRNA
GC content 0.46
exon number 17
gene id AMCG00014356
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10721084 ~ 10754147 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTAAGGCTGCTGAAGGATGGTGCTGACCCCAATACACTAATTTCTTCAGGAGGATCCCTGCTCCATCTGTGTGCGCGCTATGATAATGCCTTTGCCGCAGAGATTCTGATTGAGAGGGGGATGAACGTCAACCAGCAGGACGAGGATTTCTGGACTGCGCTGCATGTGGCGTGTGCCTGTGACAATGCCGATATTGTTCTTCTTCTGTTGCTGGCCGGGGCCAATGTGTTGCTGCAAGATGTCAATGGGAACATTCCTTTAGATTACGCGATGGAAGGGACAGAGACAAGCTACATTCTTTTGAGGCATCTGGAAGAAAATGGTGTGGATGTCAACTCCATGCATCATATGAAAACACAGCGGCCTCTGACCATGTTGTCAGATGTCAAGCATCTCATAGCAGCTGGAGGAAGTGTGAACCAGAGCAATGAAGAAGGGGTGACATTGttaCATATGGCCTGTGCCAGTGGCTACAAGGATGTGGTTTCTCTATTGCTAGAGAATGGAGCTGACCCTCAAGTGGCTGATAATAGCTATTGGACACCTCTACACCTGGCAGCAAAATACGGACAGGCAGAGGCTACCTGGGAGGAAAGGCTGAGGGACCCATCCTCTCTCTCATTACCAGCAGAGGAAGCGTGTGAAGAAAACAGCCATGATGTGTCCATGCAAGTGAAGAAACTGAATCCTCTTACCCTCTCCATCTCCAAGCAGGACAGCCTTCTTGAAAAAAATGCCATGTTCAGAGACACAACTGGTGCCCCGTCATGCCAGCCGTCTCAAGACAATGGGCGTGACAGCAATTTCATTAGTGGCTCTAGCAAACTTGAACAGATAAAACTAATGCCTCCTGCACCGAATGATGATTTGGCTTCCCTGAATGAACTGACTGAAAGTAGCCTACTGTATGAAATGCATAAACGCTTTGGAAATGATCAGATCTATACCTATATTGGAAATATTCTTTTGCTGGTCAATCCAAATAAGGAGCTTCCTATATATTCAACACTGGTTAGCCAGCTTTATCTGAGCTCCAGTGGGAGGCTGTGTTCGTCCCTCCCTCCGCACATCTTCTCCTCAGCTGAGAGAGCATATCACATGATGGTTCAAGAGAGGCGGCCCCAGTGCTTTATCCTCAGTGGAGAAAGTGGTTCTGGGAAGACTGAGGCCTGCAGGCACATAGTGAAGCACCTGGCTTCACGCTCAAGTACGAGAGGAAACTCATTGGAACCTAAAATTAGACATTACCTTACACTGCAATACTGTGAGAAGAAAAAGTCTTTAATCAGAGcTAGAGTTTATACATATCTTTTGGAAAGGTCCCGGCTCATTTCACCACCACCTCATCAATTcaactttaatatattttacctgATGGCTGATGGGATGTCCAGTGAAGAGAAGTGTGGCCTTTATCTCAACAATTTCCTCGCACACAGGTTCTTGAGCCAGAATATACCAGAAGAGAGAGGAGCAGCAACAAACATGCAGAACAGAGACAAGTTTGCTGCCCTAAAACAAGCCCTGAGGGCCCTGGGCTTCAACAACCTGgaGGTGGAAAACCTGTTTGTGATTCTTTCTGCCATCCTTCACCTCGGAGACATACGGTTTACAACACTGACAGATGCTGAGACAGCGTTTGTGTCAGACCTGCAGTTGCTAGAACAAGttgCTGGAATGCTGCAAATTTCATATGACGAACTTGGATCTGCATTAACGTCTGATGTCCAATACTTCAAAGGTGATGTGATAATGAGAAGACATACAGCTGAAATGGCAAATCATTACAGGGACCTTCTTGCAAAGTCCATGTATAACCGTCTCTTCAGCTTTTTAGTGAACAGCATCAACTATTACCTCGAGGGCCAGGAAGACAGCAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86811 lncRNA upstream 227688 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 497049 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 569171 10147979 ~ 10151913 (+) True AMCG00014345
TU86731 lncRNA upstream 665351 10055377 ~ 10055733 (+) True G69431
TU86728 lncRNA upstream 666373 10054491 ~ 10054711 (+) True G69428
TU86857 lncRNA downstream 83057 10837204 ~ 10838230 (+) True G69540
TU86875 lncRNA downstream 205179 10959326 ~ 10961929 (+) True G69556
TU86944 lncRNA downstream 466923 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 886936 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 965171 11719318 ~ 11722767 (+) True G69722
AMCG00014357 mRNA upstream 49346 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014350 mRNA upstream 340663 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014351 mRNA upstream 403082 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014352 mRNA upstream 478823 10229000 ~ 10242261 (+) True AMCG00014352
AMCG00014344 mRNA upstream 558919 10156465 ~ 10162165 (+) True AMCG00014344
AMCG00014355 mRNA downstream 12489 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014362 mRNA downstream 307448 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014363 mRNA downstream 343420 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014361 mRNA downstream 371252 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014369 mRNA downstream 423814 11177961 ~ 11220774 (+) True AMCG00014369
TU86705 other upstream 712436 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3304490 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3371617 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6069120 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3582711 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4921484 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4921484 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5375378 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5711534 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile