RNA id: AMCG00014358


Basic Information

Item Value
RNA id AMCG00014358
length 3189
RNA type mRNA
GC content 0.51
exon number 1
gene id AMCG00014358
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 10900008 ~ 10903196 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCGAGTCCGCCAGCCCTGGGAGGACACTTATTTACCATTAATAGCGACCACGTTAAGAAAAGCGGCTACCTGAAGAAGCAGAAGCACGGCCACAAGAGGTTTTTCGTGTTGAAGGGGCACGGCGAGCGCTGCCCTGCCCGGCTGGAGTACTACGAGAACgagaagaaatggaaaaacaagtcGGCGGCGAAGAGGGTGATACCCCTGGACTCCTGTCTGAACATCAACAAGAGGGCAGACGCCAAACACAAACACCTGATCGCCCTGTACACCAAGGACGAGTATTTCGCCGTGGCTGCCGAAAAcgagcaggagcaggagaacTGGTACAGGGTGCTGGCCGATTTAATGAATGAGGGGAAAGTGTGTGACGGGTCGGCTTCTGCTTCTGCCTCCTCGCTGGTGGGGTTTGAAGAGGCCAACTACGGGCTGATCACGCCGGCGAGCGCAGTTTACAGGGAGGTATGGCAAGTTAATCTGAAATCCAAAGGACTGGGGCAAAGTAAGAATCTGACGGGGGTTTACCGGCTGTGTCTGTCCAGCCGCACCATTAGCTTCGTCAAACTGAACTCGGAGGTCCCCTCTGTCAGCCTGCAGCTCATGAATATTCGCAGATGCGGGCACTCGGACAATTTCTTCTTCATTGAAGTGGGCAGGTCCGCCTCCACAGGGCCGGGGGAGCTGTGGATGCAGGCGGACGACTCTGTGGTGGCCCAGAACATCCATGAGACCATTCTGGAAGCGATGAAAGCCATGAAAGAGCTCTCTGAATTCAGACCTCGGAGTAAAAGCCAGTCCTCGGGCACAAACCCTATTTCCGTGCCCACGCGGCGGCACCTGAACAACCTGCCTCCCAGTCAgactgggctgcccaggagatCCAGGACAGACAGCATGGCAGCCACGTCTCCTGCCAACAAATTCAGCTCCTGTCGCATTCGGACGGCAAGTGAGGGAGATGGCACAATGTCCAGACCGGTTTCTGTAAACGGGAGCCCCATCAGCCCCAGTGCTATTCGAACGCACCTGAGCCGTTCTAATACAGTCAACACCCGGCCATCGAGAGTGTTTCACACCTCCTCACTTCAACACAGCAAATCAATGTCTATGCCAGTGTCTCATTCTCCGCCTTCAGCAACCAGCCCTGTGAGTTTGTCTTCGAGCAGTGGGCATGGCTCGGCTTCAGAAGCCATTCAGCGGCCATCTAGTGAAAGTGCCTCCGTGTCAGGATCACCGAGTGATGGTGGCTTCATGTCTTTTGATGACTACGGGTCTAGCCCAGGGGATTTAAGACACTACCTGGGAAACAGGAGCAACACCCCAGAATCAATTGCGGACACACCCCCTTTTCGTGAGGGCAGTGATTTGTATGGTTACATGACCATGGAGAGGCCAGCCAGCAATCTCTTTAACCAAAATAACCGACGAACAGCCAGAGATGAGGCCTTGGATTCTGAAAAGGCATACAGAAAGAGAACCTACTCGCTCACAACACCACCCCAGCAGCGAGCGGCATCACAGGTCTCTTCTGCCTCACTGGATGAGTACACTTTGATGAGAGCCACGTACACGAATGGCAACTCTGGGCGCAATTCCTACACAGCCTCTCCCAAAGTGACGTACACCCCATATCCAGAAGATTACGGGGACATCGAAATTGGGCCCCTCAAAAGCTCAAGCAACAATTTGGGTGATGATGGATACATGCCCATGACACCTGGTGTGGCCCCACAAGCCAGCAAAAACTACATGCCAATGAGTCCTACAAGTGTCTCTGCCCCTAAGCAAATTATCAATCCAAGATCTCATCCCCAAGTGAATGGGAACGGATACAGAGCAAATTCACCCAGCAGCTGCTCACTTGATGACAACGGTTATATGAGAATGTGGTGTGGCTCCAAGTTATCTGTGGAGAGCACTGACGGAAAGCTAACAAATGGAGACTACATGAACATGTCACCCATTGACCACTGTGTCTCACTGACGCCCCCTGATTACTTCCTCAGCTCTCTGAATAGTGACATCTCGAGACCCTCCTACTCTTTCAATTCACTGCCTCGGTCTTACAAACCACAGGCCCCCAAAAATGGGGACAGTGACCAGTATGTTATGATGAACTTACAGAATCAAAAGATTCTTGAAGAGTCAAATTACTGTACTGCATCTGCTCACCCTGCTGTAACAAACCACTTAGCACCATCTCCAGtgagacaaaacagaaatgaaaacttGGTACATAGGGGGAGAGCCAACAGACCAACCAGATTGTCGCTGGACACTTTAAGGACTTTGCCCAGTATGAACGAGCACCCTTTACCTGCTGAGCCCAAAAGTCCTGGTGAGTatattaacattgatttcagTGAAACTACAAGGTACTCCCCGCCGTCTCTGTCTACAGAGAGTCCAGCGTCTTCACTGGGATCCACAAATGGCCAAAGAAGATCCCCCCTGTCAGATTACATGAACATTGACCTCAACGCTCAGTCTCCTAATTTAGTGGAGGCCCCTGCTAATGCTATGAATGTAATATCGACATTGTCAGGCTCTTGCCAACCAGATGACCAGTACCTCAAAACGCAGATCGGCTCTTTATGCATTTCCAGCTCGGCAAAAGACGATTATACAGAAATGACATTTGACATTGCAAATACCCCTCCCCAGCCCatttcacaaaaaaatgaaattgttcaAACTACAAGCCCCACCAATGGGGTGAAGAGATTAACCCTCATGGATAAAGTGTCAGTGGTGGAGGCATTCTTGCTGCCCAGTACCCCTCCAGACCCGGACAGGGGGGCAAAAGTGATCCGCGCGGACCCCCAGGGACGTAGGCGGCACAGCTCGGAGACATTCTCATCCACCACCACCGTAACACCTGTCTTTCCTTCTTTTGCCCATGATCCCAAGAGACACAGCTCTGCTTCCGTAGAAAATGTTTCTCTCAGGAAAAGCGAGGGCTCTGATGAAGAATATGGCAGCCCTATGTGTCGGGAGACCTCCGCCGGATTTCAAAATGGACTGAATTACATTGCCTTAGACCTGGATGAAAATTTGGGGAACTGTGAAAACCTTGTAAGACTTAAAACAAcgaattatttaaaatctggTATCAATGGAGTAGATGCCAGCCCATATGTCAGCCTCAGCTTCTTAAAGGAAACAGCCACTGCTGTTAAAGGTtag

Function

GO: NA

KEGG:

id description
K16172 IRS1; insulin receptor substrate 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86856 lncRNA downstream 78936 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 103819 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 106862 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 122567 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 126586 10773183 ~ 10773422 (-) True G69531
TU86933 lncRNA upstream 229592 11132788 ~ 11137086 (-) False AMCG00014365
TU87123 lncRNA upstream 866494 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 975901 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 2067057 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 2182167 13085363 ~ 13086345 (-) True G69896
AMCG00014353 mRNA downstream 191990 10652279 ~ 10708018 (-) True AMCG00014353
AMCG00014354 mRNA downstream 373039 10525613 ~ 10526969 (-) True AMCG00014354
AMCG00014347 mRNA downstream 571777 10318244 ~ 10328231 (-) True AMCG00014347
AMCG00014349 mRNA downstream 598647 10300003 ~ 10301361 (-) True AMCG00014349
AMCG00014348 mRNA downstream 643633 10241006 ~ 10256375 (-) True AMCG00014348
AMCG00014359 mRNA upstream 58053 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014360 mRNA upstream 71269 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014364 mRNA upstream 185551 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014368 mRNA upstream 201782 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014365 mRNA upstream 221833 11125029 ~ 11137076 (-) True AMCG00014365
TU86854 other downstream 101861 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 1582841 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2515784 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2741418 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2760882 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 756825 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17426543 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18486094 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21359971 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21694266 32597462 ~ 32614806 (-) True G73127

Expression Profile