RNA id: AMCG00014362


Basic Information

Item Value
RNA id AMCG00014362
length 3327
RNA type mRNA
GC content 0.56
exon number 24
gene id AMCG00014362
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11061595 ~ 11086602 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCCACGCAGGGTCAGCCGGGCCCTCTCGGCCCTAAGGGATATGATGGACCCCAAGGGTTCAGTGGCCCTCCTGGTTTACCTGGCCCAAAAGGAGAGAAGGGGGATCGAGGCAGGTCTGGAATCACTGGACCCAAAGGATCTGTAGGTCACCCAGGCCAGGCAGGATCCCGGGGGAAGCCTGGAGCAGATGGCTGCAATGGTACGAGGGGAGACAATGGATTGTCCGGTCTGCCAGGGTCAACGGGCTTGCAAGGCCTAGATGTGCTCCAGGTCCGGAAGGAAGGAAGGGTGACCAAGGAGACAGGGGTGACCAGGGTTCAAAAGGTGTCCCGGGTCCTCCAGGACTACATGCATCCGATACAGGGCCTGCTGGGGCCAAAGGTTTCAAAGGTGAACCTGGACATCCTGCCCTCCTGCCTGGACCTCCAGGTTGGAATGGGGTTCCTGGCCCACCGGGTCTTCCTGGACCCAGAGGAACATAGAGGCAGGCCTGGACTTAATGGCTTTATAGGACTGCCTGGGCTGCAGGGCCCGCCGgGTGAAGGACCAAAAGGCCTCCCTGGAGATAAAGGGTTTCAGGGCCCATATGGTGCCAAAGGTGCGATGGGTGAGATAGGTGAACCTGGACTCGTCTTGGGCTCTGAAAAAGGACGACGAGGGCCTCTTGGTGATGCTGGATTGAAAGGGGAACGTGGCCGCCCAGGCCCCCCAGGGATCCCAGGGCAGCCAGGACAGCCAGGCCACAGTGGTGAGAGGGGGCTTAAGGGCCATCATGGAGAGGTCTTGGGAGCAGCAGTTGGGGCACCTGGAGACAAAGGTCCCCCTGGATTAATAGGACCAAAAGGCCTAAGTGGAGACCCAGGCCTGCCAGGATATTCAGGCCTTTCTGGCAATAGAGGTGATCAGGGAGACCAAGGCCCACCAGGCCCCGCTGGAATGAAAGGTTCACCTGGATTCACTGGCGACCCTGGGTTTAAGGGTCATCAAGGCCAGCCTGGAGATCCTGGCCATCCTGGTTCAAGTGGTTATCCGGGTATTCCTGGACTCAGAGGTGCCAAGGGTGCTGAGGGCATGGCTGGGTTCAGTGGCATGCCTGGTCTCAAAGGTGTGAGGGGGTTTGATGGGGTGAAGGGGGAGACTGGATCTGCTGGGAATGTGGGACTGAAAGGGCACCGAGGCGTTTCTGGCGCAAAGGGTGATCGTGGACCAGCTGGTCCACCAGGCAGCAAACCATACCTCCCAGTGGTActaaaagacaaaatgaaaggaGTGAAAGGCATCAAGGGCCAGTTGGGAGAAGACGGATTTGTAGGTCAAAGAGGCCCCAAAGGAATGCCAGGAGTGCCAGGAGGGCACGGGTTTAGTGGCTTGCCAGGAGAGCCCAGTGATGTGAAGGGGATCAAGGGAGTCCCTGGACCTGAAGGGCTGCCAGGTATCAAAGGAATGCCGGGCCCCACTGGGCCACCTGGCATCAGTGGCTTTATAGGAATGCCTGGGATCAGGGTGACCTTGGCCCTAGGATTGATTTACCTGGCTCAACGGGTGACAGAGGTGAATTGGGACTACCAGGATTACCAGGGTTTCACAGGCCAGCCAGGAGATCCTGGCAGTCCCGGCTTCCATGGCATTGATGGAGTAAAAGGCATTAAAGGGGTGCATGGGATTGCAGGATTACAGGgGTTTATTGGAAGTCCAGGTTTTCCAGGAAATCAGGGTGAGAAGGGGTGGCCTGGAAACCCCGGAGagccaggagagagaggcaggcctGGCGTACCTGGCGAAGCAGGTTATCGTGGTTCTCAAGGTATTTTTGGACTAGATGGCCTGAAAGGACAAAAAGGCATAACAGGATTTCCAGGTTCTGATAGCTGGGGACCCCAAGGGAACCCTGGTCTGAAAGGGGTGAAAGGTGAACCAGGAATCCCCAGCACACTGAGTGGGTTCCCAGGTGAACCAGGCCAGATTGGACGTCCTGGAGTACCAGGTCTAACAGGTCCACCTGGGTTTTCTGACATAGTGGGGTTAGCAGGTGACCCCGGCTTCCCAGGACTGAAAGGACTGCGAGGTTTCCCTGGAGTCCAAGGCACTCCTGGAAGGCCCTCGCCTTATGGTGAAAAGGGGGAGCCAGGAGAATCAGGGTCCCCAGGACAAGATGGCATCAAGGGTGAGAAAGGAGAACTAGGCTCTCCTGGTCTGCCTGGTTTCTATGGAATCTCTGGGCTTAAAGGTCAAAAAGGAGAGCAAGGGCTTATGGGAGTACCTGGCAGAGGTGGCTTTCAGGGAGACAGAGGTCCAGTTGGACCAAAGGGTGACACTGGCCCAACAGGCTTATCTGGCCCCCCTGGTTCCAGAGGCCCAGCCCCTGTCCCTCCAGTGTTAGTGAAAGAGCGAGGCCCTCCTGGCCCAATGGGAATTCAGGGGCCTAAGGGAGTCCAAGGGGAAACCGGGCCACATGGCCCACCTGGAGATCCAGGTTTTTATGGATCCCAAGGGCCAAAGGGTTTCCCAGGAGTCAGTGGCAGATCAGGAAATCCAGGTTATCATGGGGAGTCAGGACAAATAGGCCACCCAGGCCTTCAAGGCCTTGAAGGCACAAGAGGCCGCCCTGGTGACCCTGGGTTGCCTGGCATGCCCGGTCGCACTGTTAGCGTTGGGTACCTGCTGGTGAAGCACAGCCAGTCAGAGCAGGTACCAATGTGTCCAGTGGGCATGAATCAACTCTGGGATGGATACAGTCTGCTTTACTTTGAGGGTCAGGAAAAAGCTCACAATCAGGATCTAGgaTTGGCAGGATCATGTCTTCCACGATTCAGCACTATGCCGTTCCTGTACTGCAACCCTGGAGACATCTGTTACTATGCAAGCAGAAATGATAAAACCTACTGGTTGTCTACGACGGCCCCTCTACCAATGATGCCTGTAGAGGAGGAGGAAATTAAGCCATATATAAGCCGCTGTTCAGTCTGCGAGGCTCCGTCACTGGCTATCGCTGTCCATAGCCAAGATATCACTATCCCACAATGCCCTGCAGGCTGGCGTAGTCTCTGGATTGGTTACTCCTTCCTCATGCACACTGCAGCTGGAGACGAAGGTGGTGGGCAGTCCTTGGTTTCACCTGGAAGCTGTCTTGAGGACTTCCGCACTACTCCTTTCATCGAATGCAACGGAGCCAAAGGATCTTGCCACTACTTTGCCAATGAACACAGTTTCTGGCTGACATCGATAGAACATTCCTTCCAAAGCTCTCCGTCCGCAGAGACGCTGAAAGCAGGACAGCTGCTGTCCCGCATCAGCCGGTGCCAGGTGTGCATGAAGAACTTATAA

Function

GO: NA

KEGG:

id description
K06237 COL4A; collagen type IV alpha

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86875 lncRNA upstream 99666 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 223365 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 568199 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 837560 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 909682 10147979 ~ 10151913 (+) True AMCG00014345
TU86944 lncRNA downstream 134468 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 554481 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 632716 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 697263 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 1513502 12600104 ~ 12600313 (+) True G69778
AMCG00014355 mRNA upstream 260285 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014356 mRNA upstream 307448 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014357 mRNA upstream 389857 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014350 mRNA upstream 681174 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014351 mRNA upstream 743593 10308422 ~ 10318002 (+) True AMCG00014351
AMCG00014363 mRNA downstream 10965 11097567 ~ 11105850 (+) True AMCG00014363
AMCG00014361 mRNA downstream 38797 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014369 mRNA downstream 91359 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014370 mRNA downstream 305787 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014371 mRNA downstream 453830 11540432 ~ 11561870 (+) True AMCG00014371
TU86705 other upstream 1052947 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3645001 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3712128 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6409631 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3250256 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4589029 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4589029 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5042923 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5379079 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile