RNA id: AMCG00014363


Basic Information

Item Value
RNA id AMCG00014363
length 3003
RNA type mRNA
GC content 0.47
exon number 13
gene id AMCG00014363
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11097567 ~ 11105850 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCAATGGGGAAGGGGCACTGTAGTCACTTGCTTTGTGACATTAATCGTGTCGGTGGCTGTAACTCTCTTCTGTATGCACGATGAAGTGCTCGCCACGACGCAACCCGAGGAGCAGAAGCCAAGCCCGGATCGGGTAGATCTCAGATCGCAGGCCTGGTCTGTTGTGGACCACTATGTAGTGCGCCTGTGTGCAAATTCAGACTTGGAGACCAGAGCTCTGTTGGACATCTGGGGCGAGCAGGATGTGCAGACGGCGCTGGACGGCAACTTTCGCAACAGTCACGTTTACCGCGATGTCGCCTGCAGGCTGGGGGAGATGGGCTTTGACAGGACGCCCGAGCAGTGCAGGATCCGCGTCAAGGGCTTGAAAAGACAGTACTACCAGGCGAAAGAGGGCATCAAGAAGAACGGGCACTACCGCAAGATCTGCAAGTTTTACGACGAGATGGACAGGATACTGAGTAACAGACCTCACCTCGACCCCCAGGACATGATCGACAGTGTGGCCATAGGGGATGACGCGATGGACGGCACCGAGGAGGAGGGTGATGGCATGGACCACCCGCAGGAGGCGTACATCATGGAGAGCACCGGGGAATGCTCCTATGCTGATCACCCGGTGAAGTTGGAGTATCCCTCCTTTCCCATCCCAGTGCCTGTGAGCAACAGTGCAAGTACAGGACAGAGGCAAAACAATGCCCAGAACAGCACCCCCTCCACAACTCGTACCAAGAGGTCCAAAAAGCGCTACACTAATCTGTCCCTGGATAAGCTGATGGAGAAGTTCCTGGAACAGAGCATGGAGGCAGAGGAAAACTTCTACAAGTACGAGGAGCAGCGGCTCAAAGTGGAAGACAAGCGGCGCGAGGCGGAGCATTCCCGCGAGCTCCAGATGTTGCAAGTGCTGGGACAGATGTTCGCCAGCATCGCCACCCCTGCCCCCGGGCGCCCACAGACTGCCCCCTCTGCCCCCCAGCATCGCCCGCACAATCACCACCCGGCCGAGCACAGTAATCGCAACATGCCACCGTCGGCGCCATCCCAGCCCATAGTTATTGAGAGAGCCTTCTCACTCAGAAGTCCATCACCAAGGAATATGGAAAATATTCTTCCTCTCGTGAAAAATATCGTTCCTCCTTTGACATCAAAAAAGCATAAAGGTCAAGATGGAAGGATTGGTATCATAGGAGGATGTCAAGAGTACACAGGAGCACCATATTTTGCAGCTATTTCAGCTCTTAAAGCGggGGCAGATGTGTCTCATGTATTTTGTACCAAAGATGCTGCAACTGTAATAAAATCATATAGTCCAGAACTGATCGTACATCCAATCCTcgaCAGTCCAAATGCAGTTGCAGAATTTGAGAAGTGGCTGCCAAGGCTTCATAGTATAGTAGTTGGACCGGGTTTAGGCCGAGATGATAAGCTGCTTGAAAACGCTAAGGGTATCATTGGCAAGTCCAGGTCAAGAGATATCCCAATCGTTATTGATGCAGACGGATTGTGGCTCGTATCCCAGCATCCATCTATCATTCAAGGCTACCAGATGGGTATTCTAACTCCGAATGTTATGGAGTTCAGTCGACTGTATGAAGCGGTGTGCCAGGACTCCATGGACAGCAGTgacaaaaagagaaatgtcATGCGTCTCAGCGAAGCCATGGGAAACCTGACTGTTGTCCTGAAAGGCGAAGAGGACATCATTTTTGATGGAGACAAAATGGTGGTCTGCAGCCATGAAGGCAGCAGCCGCAGATGTGGGGGGCAGGGTGACCTCTTGTCTGGCTGTCTCGGAGTCATGGCACATTGGGCATTTATGTCAACGACCGAAAAAACAAATGGAGTCAAGCCCTCTCTCATCGCTGCATTCGGAGCCTGTAGTCTCACTCGCCAGTGCAACCGACAAGCTTTCCACAGGCACGGCCgggccaccaccaccaccgacATGATCGCAGAAATCGGCGCGGCCTTTAAAAAACTTTTTGAGAGTTAAACCTGGACAGGTTTCAGCACAGGGAAAGACAAAGGTCACCAGCCTTCCTGCACGTGCCGTAGTTAAGTTTGAGGTGCAACATACTTTGACGTGCGGCAGCAAGCTTAATTAGCTCTTTCGAAGTCAAAAGACCTTTTAGCAGTAGACTTTCTAAACAACCGTAAGAAAGTAACTTCTTGAGTGAAAGGAGAACTGCAGAGGTTTCTCAACAAGAGCAGATTTGAATGGTGTTCAGTGTCACAATTGTCAATTAATAAACTGGGCTTCCCACACATTTGAATCATCACTATAAAACTGAGGCCAGAGAGGATGTCTTGCCATCTGTTCCCACCCATTTCCACAGATTGCTCcatataataaatgcaattgcaatatttcccttttaaaaaaacagtacagtggTTCAGTATTCTGATTGAGATGTTTTAAAGTGTGTAACGTTTGGAGTTTCCACAGCGTTTTCAGATATACAGGTTTTTTGAATTgggttttttcatgttttatgaatTATCTGTAAATTCTGTGGctttgtatatacacacaccatagATAGATAATAGGATACAAAAGTGGGTTCACTTGAGGTCTGGTAAGAAGTTGCTCATGGATTTTAACAAGTGGCACAGTAAGCAGTACATCTTGTTTGTTGTTCATGCAACccttacatatatatttaaaggtgtttttgttgtgtttgagaTCTTTGTTACCTATTTGACACCTTTTTTGAAGTATTACAGTATTTGCTgtgaaatgtttatgaaaagGATGGATCAAAGGAAAACACAGAGGGTTTTAAGGAAACTCccacttaaaacaaaactgtgtagtttatcaatacaaatgtgtttatggACAAATTAAAGCAGTCCattcaaaatagttttaaataagtGCAGCACTCTTATTTTTATACACCCCCCCCAAAACTGTGATCTTTAGTTTTTTCAGCCTATCCCATTTCAGGATATGCCTTTCATCTCTGTGTGGAGTTACTAGATAATTGAA

Function

GO: NA

KEGG:

id description
K17757 CARKD; ATP-dependent NAD(P)H-hydrate dehydratase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86875 lncRNA upstream 135638 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 259337 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 604171 10493147 ~ 10493396 (+) True G69499
TU86759 lncRNA upstream 873532 10223671 ~ 10224035 (+) True G69457
TU86745 lncRNA upstream 945654 10147979 ~ 10151913 (+) True AMCG00014345
TU86944 lncRNA downstream 115220 11221070 ~ 11221274 (+) True G69610
TU87041 lncRNA downstream 535233 11641083 ~ 11641452 (+) True G69681
TU87100 lncRNA downstream 613468 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 678015 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 1494254 12600104 ~ 12600313 (+) True G69778
AMCG00014362 mRNA upstream 10965 11061595 ~ 11086602 (+) True AMCG00014362
AMCG00014355 mRNA upstream 296257 10766636 ~ 10801310 (+) True AMCG00014355
AMCG00014356 mRNA upstream 343420 10721084 ~ 10754147 (+) True AMCG00014356
AMCG00014357 mRNA upstream 425829 10665393 ~ 10671738 (+) True AMCG00014357
AMCG00014350 mRNA upstream 717146 10352845 ~ 10380421 (+) True AMCG00014350
AMCG00014361 mRNA downstream 19549 11125399 ~ 11129360 (+) True AMCG00014361
AMCG00014369 mRNA downstream 72111 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014370 mRNA downstream 286539 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014371 mRNA downstream 434582 11540432 ~ 11561870 (+) True AMCG00014371
AMCG00014373 mRNA downstream 500118 11605968 ~ 11640460 (+) True AMCG00014373
TU86705 other upstream 1088919 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 3680973 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 3748100 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 6445603 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 3231008 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 4569781 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4569781 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 5023675 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 5359831 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00072773 False 3053 mRNA 0.48 11 NC_007120.7 8898442 ~ 8923471 (+)
grasscarp (Ctenopharyngodon idella) CI01000037_03811261_03823037.mRNA True 1815 mRNA 0.50 10 CI01000037 3811261 ~ 3823115 (+)