RNA id: AMCG00014365


Basic Information

Item Value
RNA id AMCG00014365
length 5842
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00014365
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11125029 ~ 11137086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGGGGAAGGGATCCGCTCTGGCTTTAGCTGGTCAATGCtcttttactgtttatttataagCTTGCTAGTGGACAGACGTTGCCTCCCATTGCGGGATGTCTACTCCAGCAAGAAGGCGGCTTATGAGGGATTTTAAACGtaacaCGAATGAGTGCAGGGCTGAGTGTCCGTGTGTCCGCAGGCTGCAGGAGGACCCCCCGGCCGGCGTGAGCGGAGCCCCGTCCGAGAACAACATCCTGGTGTGGAATGCGGTCATATTCGGcCCTGAGGGGACACCTTATGAAGATGGCACTTTTAAGCTGACAGTTGAGTTCACGGAAGAATACCCAAATAAACCACCAACAGTTAGATTTgtttcaaaaatgtttcatCCAAATGGTATGATTTTGTCAATATTAACCTATACATACATGACACGGGTCTCCACCTTTCAAATTCACTGTTGGATGAACCGAACCCAAACAGTCCTGCTAACAGCCAAGCTGCTCAGCTTtaccaggaaaacaaaagagaatATGAAAAACGAGTTTCAGCGATTGTTGAACAAAGCTGGAGAGACAGCTGACCACATACCTTCTCAAGAGCACTAAACCTTTTCTTTaggttgtgttgtttttgtaagcaCTTTGCCTCAGAATTGCGCTGTTGTATGTGTGCAAGCTCTGGTGTACGTTGTCCCTGGAAGATTATTGATTTGAGCACAGTCACTACATTCTTTCTTGCTATTGAAGCTTGATTTTCTAGCAattcttttgttattttgtttgagaTCTGTCTTGAAATTTTGGTTGTAGAATTTCAATGATGCccccattaataaataagtctGGCAGAttttgttgaaatatatatttttttttactatacaACTAATTATATAGTAAGACCTTTTATTTTGGTTCATATTTTTGTACTAATTTGCCCCTTGTTCCTGCTCTGGGGGGTTGAATAGGACACACATGCCTAATGTTTAATCGGCTATATTTTTGTGAACCTCCCCTAATTCTTTTCCATAATTTAATCTAGGCTATTTTACAAGGCCATTTAAAATGATCCTGCCATACTGTGAGAGAATGTACAATGTCTGTTTTTAAGTActcctgtgtatatatatatatatagtacatttcaGAAGATATGGTGCACAGGTTTTGCACAAGTGATCCATGTATGaatgctgtaaataaaaatggaaaatcccTTTATTAAAGAAGCATCTTTTTATTGAATAATATTCCATAGGTTGGGTATTTTTGGTATAACAGCATGCAGTACAGCAGGTTTCATCATCACATTATGAGAATAGGTAGTTGCCCCTCAAACATCTCTTCTGTCATTAAATGGAAGAAAACTGATTCTGTTTACCAGCAGATATTCCAGGCTGTTAATTGAAGCATAATATGATGTCAatagaaactaaataaaataaatgacattttattttattctcactGCTGGTTTGGGTGGCCCATTCTCACTACATATGCTGTTTTGGTTTACCACTCTACACTATAACTTTTTACAGTTCCCTatacttttgtaatacaattcCTAAACATGATTCAACTTGGATTAAGGCCTCAGCCAGATACTGTGCAATGTATATACACGTTAAACCATTAAAATCATCAACTTTAATCTGGAGGTATGGAGACCCTATTGCTCATTTTGTTCTGGTGGATTAATTTCTCTTTCCTGTTGAACTAAAGATCACCCCCTGGGGTGAATGTTCTGTCAAACAAGATAACggattttacaatattttaaaacaatcttgtAAATCTCTTCTGGTGCGGACACTGCTGTGGAGAATAgacaagaaaacacatttttatctCCCTTGACGGTAAATGACGATTTATCATTTTGCTTTgccaaatacacaaattaaataaatcctatGGTTATCATACACTATGATGGCTCATCGCAGAGTAAGCTGTACTATACTGTGCATTGTTTTCTGCTACAGGAAGCTAGTGGGTTAAAATAAAGTTGATTGTTATACTTTGCAATTTATGAATGCTGGGGGAATTACACTGGTATATGATTTTAGTTTCAGAGAAAAAGGTGTCCAATCAAATTGGCTCCTTTCTGTTTGAAGATTTTTCTGAAGGCGAGGGAAAGGAATATTGTGTTGGGTTCATCCCTTTACAAGCAATGGTGGGAAAAAGGCAAGCACTACTTTGATCTTCAAAAAGTGTATGTTTTAAGATATCTGCTATAGTGCTTACCAGGATTTTCAATTTACTCACTTACTCTcccatatttttcatttatattcttTATCCAGGGATTTCCTGTAGTTTATCATGAAGTACAGTATGTTGCTTCACTGCTGGAATCAGGTTCCAACCTTTTTGCATGTAACACATGGGAGTAACAGACATGAAAAAGGGGGCTGCAAATATCCTTGAGGTTGATGATAGTCTGAATACAGGGAGTAGAAGTGTAGTGTTACTAGCCATTTACTTTGATGTTGATGCAGGGGTTAATCTCTTTCAGGATTTCCAAAGTGATATCCCCTCAGGGGACAAGGCACAGACAATATTTCAGAAACTGTTCATTTCTTCTATTTTAATAATGGTGGTatcacatatttacattttgaatacgAAAGCGCTCATGACtcaaatcacacacaaatgCTGCCAGCTGAACTTAAAATACAGGAAGTGCAATTTCacataaaaagtacattttttacatGTACTAAGATTTTTCTTCCAACAAAACCAGAACACATTTGGAGTCTTAagttctaaacaaaataaacatgttggtATTCATGTagttcacataaaaaaataatagtgtGCAAGGACAGAACAAAAATCctacaataaaatgtacaatgccTTCAACGTAAAACAAACTATTGGTGCATGGATGTTTTCAGCAGAGaaccatgtattttatttgcattcattCTTATTAAAACTCAAACTGTTAAATTGGGCTTGTTATTCCAAGAACTGGAATGTTTTCACTTCCTATTTGTTCCTTTATTGTTTACCCATAAGCTCAGCTAATTACTTggttaaaaaacattaacagaTAGGCATTTACCCTCAAGACCCTGAATGTAAGCATTACTCATACTGTTAAGGTTGTCTTTTACACACTTTGTGTAACTAGCCATGTAAGTGGCGGGGGGGATTTCTATGGACGAACAAACTCGTTGTGATTCTCTGAAGTTCCACCTGAATACATGAGAACAGGACGTTTCCCAGGTACCCTTCAGCAAAATGATGCACTACATGACACAGTATTCAGTACTGTAGTAGTTCAACATCAGTGGCTTCAAAAAAGTCTTACCTTGGAGACATAATCTTGTAGATTtaagagtgaaaataaaaatcagctgCTTTCCTTCCTGTCTGCAACCATTATAGCAGAGTTCATGCAAAGACTAACTTTATTCTCCTTGTGTTTGTGGACAGGCATCTGCCAGTCGGGTGATTAAAACCTTGCTCAGTGTGGATACTTGCTTGCTTATATGTGGGTTACAACTGGTAACATATTTGAATGGGGACTCCAACATTAAGGGAAGAAAACTAATCAGCCATGTTCTTcactattatatttttaaaatactgactTACCACAAATGCAGCAGCTAGTCTGTGATTAATAGCAACCACTTAACAATAGTGTTGGCATCTCAAAATAGTTTACCCCAGTGATACACTTTATGTGCAAAAGGGAAGGGGACGAGGTGAAGTGTGGAATTATTGCTTTGTAAAGATTTCACAAAAAGCAAACGTGGGAAGTGCTCCCTGTGACAAAAGCAAATGAGGTGAACCGTGTAGCGTAACACATTTCAGAACACGGTTAGATCTatgtaattaatacaaacagTAGCACGTGGAAGACAAACATTAGGAATCAAGGATCTTTGGGGAATctatataatctttttttagaaaaaacatcaatacaatttattttattcacctTCCAGTCATTAAAATTATGTTGAAcactagttttattttatttttaacggccaattatttttcctctttatcCTGCAAtttgtaggttttattttttctccaataGTCCCTGTATTGACTGATGGACCTGGGCAATGCCAAGAACCTCAGAGCAGCCTCTGAGACTACTGAGAGGTCACTTTTTGACCATACAAACTGAAGCAGCTGAGCTTTGGTACCAATAAGAGGACAAAGACCCTGCTAAAAATGCCCAGTCCTGTAAATGCCATTTCGACCAAACAACTAGTGCAAGGGAAGATGAAGACCCCCAGGCCAACTCAATTGCACCCAATCCCATTTGGGCAGTTTAATACTATTACTTGGGTCTCAGCAAGTGGCACTGCCTTGATTCGAACCAGCGATCTCCAGGTCTCAGCGCTCATCCTTCACATTACTGTTGGAGCTGCATacactgctgctgttttgtCATTAATTGATAGATCTTTCCGTCTCATATCTTTCCTTCTAACCCTGTGTGCTTAAAGGTAAGGCTGGACTTAGTCAGAGAGCTTCTGAATACAAGAGCCCCACCCCTTCCCAAATTTCAAAAATGTCAACACTCCTTGCAATTGAAAGAACAATGACCCTCATCATAAATATGCACATTTGTGGTGTTCTCTGTCCATGTTACAACACTTAACTACCTATTGTATGCCCTTTCCTTTTTGGATTTCTCAAGAGCTTTGTCCATGGTTTTCTCATTCTCTCCCCTGCATTTGGGGCAGTACCATTTGCCCTTGGGCTTGTGATTGAGTCCAACGCAAGAGAAGTGAAACCATTCGATGGGGCATTCGTCGTTGTCGCAGCCGATCATCTCTCCGTACGATACCTGGTTGCACAGGCAATATGTGGGCTCATTGGGATCAATGGGCAGGTCTGCAGGAGAGGCCTCCCTCTCGGCTTTGGCTTTTGACCGCTTCTTCTTCTTCGAAGTCTTAGCCTTCTTCTCCTTGGGTGTCCCGGAGCTGATTTCATCTCCATGGTCCAGGTTGTTGTTGGAGTTCTCTCGGTTCTCGTTGTTCTTCTGCCGCCTGGACCGCTTGTTGCTGTGCTTTTCGTTGGTGCCCGTGGACTCATTTCTAGTTTTCTCCTGGCTAGTCTTGCCTGGAGTGACCAAGCCCTCATTGGGCTCTTGGCAGGCATCGAAGAGTTCCACATGGCTCTCCACTTGCCTGCTCCGGTTCTCGACAAGCTCCACCATCTGGCTGACGATCTGGATCTTCTCATCACCGAGCTCTTGGCTGCGGATCAGTGCTCTCTGGATGCAGTGCAACAACCTCTTCTTCTGCACCGGGTCCGCCTCCTTTTTGTGCTTCTCGTAGATCTCATCCAGCTTACCTTGGTATTTCGCGTCGATTTCCCTCATTAAAGACACGTTTCTCTGGAGGTCGAAAGGCAGCGACTCGACCAAGTCCAAATACTCCTCCACATAGTTCGCAACGTGGAGCGGGTCCCCGTTAGCAGGGCTCAGCATTTTGTGATTTTCCTCGCACAATGAACACGAAATGGGCGCAATCTAGCAGAAAAACAGCAACTACATCTGGTTATTCGCAGTACGGCGGACAGATCACCATCTCCTTCACTGCAGCCCAGGAGTAGAAGCAGACTGAATGGCTGTCAGACAACACAGTCTAGTGGAGGTTCAGCTGAAACGCGTTGAAAAAGTCCTCTTCCCTGCAGTTCAGACACCGAGGAAGGATCCCGGACGATTCCCCCGCCGATAGAGCTTGTCGGGATCCCGTCGAGTGGGTCGTCTTTCCCCCGTTTGGTGGCAAATTCGCCGATTAGTGCCTCTGTTGCTACTGCACTTGATCCAACGTGGAAAAACCAAATACCAGTTTCAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K19197 ING1; inhibitor of growth protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86856 lncRNA downstream 303957 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 328840 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 331883 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 347588 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 351607 10773183 ~ 10773422 (-) True G69531
TU87123 lncRNA upstream 632614 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 742021 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1833177 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1948287 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1948287 13085363 ~ 13086345 (-) False G69896
AMCG00014368 mRNA downstream 3198 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014364 mRNA downstream 28596 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014360 mRNA downstream 133885 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014359 mRNA downstream 150912 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014358 mRNA downstream 221833 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014366 mRNA upstream 2376 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014367 mRNA upstream 30564 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014372 mRNA upstream 322537 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014374 mRNA upstream 522935 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014380 mRNA upstream 560113 11697189 ~ 11722453 (-) True AMCG00014380
TU86854 other downstream 326882 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 1807862 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2740805 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2966439 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2985903 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 522945 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17192663 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18252214 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21126091 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21460386 32597462 ~ 32614806 (-) True G73127

Expression Profile