RNA id: TU86933


Basic Information

Item Value
RNA id TU86933
length 1630
lncRNA type sense_over
GC content 0.41
exon number 5
gene id AMCG00014365
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11125029 ~ 11137086 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGGTGGGACGGGGAAGGGATCCGCTCTGGCTTTAGCTGGTCAATGCtcttttactgtttatttataagCTTGCTAGTGGACAGACGTTGCCTCCCATTGCGGGATGTCTACTCCAGCAAGAAGGCGGCTTATGAGGGATTTTAAACGGTAGAGTTCCCTGGGCGCAGCTCTTAATTGATCTCCTATTCATGTGTGTCACAGCCGGAAAACAGCTGTGTTTGTGACggggaacaaacaaacaaacaaacatggcgGCCGTCGACGACTAATAAGCCTCAGGACAACTTTGACGAGAATCAACTGCTGCTCCTAACCGCTTTCAAATGGGCTCGTTTGCTATTGCAGATATGCGTGTCCCTGTCCTAAATCAGTAGATTCACAGGTCTCACAGTGCTGTTGTAATCATAGTGATAGTACAGTGTAAACAAAGTTAGTCTTATATTGTAGTCCAGATGCTTTGTCACgtacattttcagttaaatcCATACATCTCATATTGTaatatgtgtattaaaataattaaagtaacaCGAATGAGTGCAGGGCTGAGTGTCCGTGTGTCCGCAGGCTGCAGGAGGACCCCCCGGCCGGCGTGAGCGGAGCCCCGTCCGAGAACAACATCCTGGTGTGGAATGCGGTCATATTCGGcCCTGAGGGGACACCTTATGAAGATGGCACTTTTAAGCTGACAGTTGAGTTCACGGAAGAATACCCAAATAAACCACCAACAGTTAGATTTgtttcaaaaatgtttcatCCAAATGTGTATGCAGATGGTAGCATATGCCTTGATATTCTGCAGAATCGCTGGAGTCCGACTTATGATGTATCATCAATTCTGACTTCTATACAGTCACTGTTGGATGAACCGAACCCAAACAGTCCTGCTAACAGCCAAGCTGCTCAGCTTtaccaggaaaacaaaagagaatATGAAAAACGAGTTTCAGCGATTGTTGAACAAAGCTGGAGAGACAGCTGACCACATACCTTCTCAAGAGCACTAAACCTTTTCTTTaggttgtgttgtttttgtaagcaCTTTGCCTCAGAATTGCGCTGTTGTATGTGTGCAAGCTCTGGTGTACGTTGTCCCTGGAAGATTATTGATTTGAGCACAGTCACTACATTCTTTCTTGCTATTGAAGCTTGATTTTCTAGCAattcttttgttattttgtttgagaTCTGTCTTGAAATTTTGGTTGTAGAATTTCAATGATGCccccattaataaataagtctGGCAGAttttgttgaaatatatatttttttttactatacaACTAATTATATAGTAAGACCTTTTATTTTGGTTCATATTTTTGTACTAATTTGCCCCTTGTTCCTGCTCTGGGGGGTTGAATAGGACACACATGCCTAATGTTTAATCGGCTATATTTTTGTGAACCTCCCCTAATTCTTTTCCATAATTTAATCTAGGCTATTTTACAAGGCCATTTAAAATGATCCTGCCATACTGTGAGAGAATGTACAATGTCTGTTTTTAAGTActcctgtgtatatatatatatatagtacatttcaGAAGATATGGTGCACAGGTTTTGCACAAGTGATCCATGTATGaatgctgtaaataaaaatggaaaatcccTTTATTAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU86856 lncRNA downstream 311716 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 336599 10795883 ~ 10796189 (-) True G69536
TU86852 lncRNA downstream 339642 10792919 ~ 10793146 (-) True G69535
TU86849 lncRNA downstream 355347 10777051 ~ 10777441 (-) True G69532
TU86848 lncRNA downstream 359366 10773183 ~ 10773422 (-) True G69531
TU87123 lncRNA upstream 632604 11769690 ~ 11771393 (-) True G69743
TU87141 lncRNA upstream 742011 11879097 ~ 11880456 (-) True G69759
TU87239 lncRNA upstream 1833167 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 1948277 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 1948277 13085363 ~ 13086345 (-) False G69896
AMCG00014368 mRNA downstream 10957 11104978 ~ 11121831 (-) True AMCG00014368
AMCG00014364 mRNA downstream 36355 11088747 ~ 11096433 (-) True AMCG00014364
AMCG00014360 mRNA downstream 141644 10974465 ~ 10991144 (-) True AMCG00014360
AMCG00014359 mRNA downstream 158671 10961249 ~ 10974117 (-) True AMCG00014359
AMCG00014358 mRNA downstream 229592 10900008 ~ 10903196 (-) True AMCG00014358
AMCG00014366 mRNA upstream 2366 11139452 ~ 11144825 (-) True AMCG00014366
AMCG00014367 mRNA upstream 30554 11167640 ~ 11175442 (-) True AMCG00014367
AMCG00014372 mRNA upstream 322527 11459613 ~ 11502601 (-) True AMCG00014372
AMCG00014374 mRNA upstream 522925 11660011 ~ 11667537 (-) True AMCG00014374
AMCG00014380 mRNA upstream 560103 11697189 ~ 11722453 (-) True AMCG00014380
TU86854 other downstream 334641 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 1815621 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 2748564 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 2974198 8156229 ~ 8158590 (-) True AMCG00014298
TU86293 other downstream 2993662 8137331 ~ 8139126 (-) False AMCG00014297
TU87063 other upstream 522935 11660021 ~ 11662493 (-) False AMCG00014374
TU90285 other upstream 17192653 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 18252204 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 21126081 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 21460376 32597462 ~ 32614806 (-) True G73127

Expression Profile