RNA id: AMCG00014378


Basic Information

Item Value
RNA id AMCG00014378
length 1399
RNA type mRNA
GC content 0.41
exon number 12
gene id AMCG00014378
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 11668156 ~ 11678181 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAAGCATCTACCCTGGGTCCTAAACCCTGCCCGCTCGTGGTTGGTAAACAATATTGTTCGTTAGGGCTCCGATAtcagaatattttacatatcactgaaaaggtttttttttttaaatggcaaaagAATCGTCGGTTTATTGCGGATTTTGCCAGGAGTCCAAAGAGACGCGTTCAACCGGACCCCTGTTGAAGAAGGACAGCGTGGTTGCACACGAGTGTTGCATGTTGTTCTCTTCTGGGATCCACACCAAGAGCATTCCTGAATTTGATGATCTGGCAGGATTTTCAGTAGAAGATGTGACCGAGGAACAGAAGCGGGGGAGCAAACTGGCATGTGACGCTAAATGCTTCCAATGTAAGAAGTATGGTGCGACTGTTGGCTGTGACCTCACAGAGTGCGAAAGATCTTATCATTACTTGTGTGCCCTAAAGGACAAGGCTGAAAAGCTGGAAGATGATGAAAAGGGTATTTATAAgATTTTCTGTGAACTGCACAAGGATTTTCGAGATGATGAATCAGGAGtagATGGAAGTGACTCCTCTTGTGAAGATAGTCAGATGTCTGTGGAATCGGATGGTGATGAAGTCGTGATGCGTACACCCAGGCGTAAATTTAATTGTCCaGCGTTCAATGAAGACTCAGAATCTAAAATACAAAACCGTGCCGAAGAACCAGGGACTTCAGCTTCAGGGTTTACTGTGAAGCCCTGTAGTGTCAACATAAGGCCCTGCCCGGTTATGAAAAAAGATCCTCCAAGCAAACCTCTACAGAAAGGGAATCCGGCCTCATTCTGGAGGAAGTGCCGGGAGGCTGGGTGTGTGGAGAAAATCTTCTCAGACTTCATTTTAGCCATGACCGCTGTTTCAGAGAGAATAAACACTGACCAGGCAGATGATGAAGACTACGCCTTTTCTCTGAAAGTCCTGCAAGCGTCTGGAATGTTACCCACAATTCTTTCAGAAAAGGAACACGAATTCGAGGAGAAACtggaaaaagttaaaaaagaaaaggatgttTTGGTGAACTCAAAACGAGCAATGCATTCAGTGAAAGAGATGTTGAATATCGAATAAGTGACCAGGAGAGGAATGCCAGTGCAGAATCTCAACTTGTACCTTTTAGAAGAAAATGTGTCAATATGTTTGACTTGTCTTTTCAGAAGAGCAGTAATCCTATAATTCTAAAGTTATATCTGGTCATTTCGTGAATTTATATGGATTTACATACTTCAGAATCCAGTTAAgttcacaatattattttagtttttagttctTCTTAAACAATTttgtcactgtaaataaaatattaatgttccTCTTGTACCCAAGGTTAGTTATCTTACCTGTGACAGATGCTGCCTTGTTCGTACTTCTGAAATAAAAGGGTTTGAAAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87041 lncRNA upstream 26704 11641083 ~ 11641452 (+) True G69681
TU86944 lncRNA upstream 446882 11221070 ~ 11221274 (+) True G69610
TU86875 lncRNA upstream 706227 10959326 ~ 10961929 (+) True G69556
TU86857 lncRNA upstream 829926 10837204 ~ 10838230 (+) True G69540
TU86811 lncRNA upstream 1174760 10493147 ~ 10493396 (+) True G69499
TU87100 lncRNA downstream 41137 11719318 ~ 11722767 (+) True G69722
TU87118 lncRNA downstream 105684 11783865 ~ 11784083 (+) True G69739
TU87160 lncRNA downstream 921923 12600104 ~ 12600313 (+) True G69778
TU87223 lncRNA downstream 1302078 12980259 ~ 12982434 (+) True G69833
TU87357 lncRNA downstream 1568128 13246309 ~ 13251732 (+) True AMCG00014407
AMCG00014376 mRNA upstream 8610 11644028 ~ 11659546 (+) True AMCG00014376
AMCG00014373 mRNA upstream 27696 11605968 ~ 11640460 (+) True AMCG00014373
AMCG00014371 mRNA upstream 106286 11540432 ~ 11561870 (+) True AMCG00014371
AMCG00014370 mRNA upstream 274751 11392389 ~ 11393405 (+) True AMCG00014370
AMCG00014369 mRNA upstream 447382 11177961 ~ 11220774 (+) True AMCG00014369
AMCG00014377 mRNA downstream 11052 11689233 ~ 11696926 (+) True AMCG00014377
AMCG00014381 mRNA downstream 33217 11711398 ~ 11711931 (+) True AMCG00014381
AMCG00014382 mRNA downstream 81720 11759901 ~ 11761901 (+) True AMCG00014382
AMCG00014375 mRNA downstream 88247 11766428 ~ 11767590 (+) True AMCG00014375
AMCG00014383 mRNA downstream 191844 11870025 ~ 11877714 (+) True AMCG00014383
TU86705 other upstream 1659508 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 4251562 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 4318689 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 7016192 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 2658677 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 3997450 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 3997450 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 4451344 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 4787500 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile