RNA id: AMCG00014397


Basic Information

Item Value
RNA id AMCG00014397
length 5696
RNA type mRNA
GC content 0.43
exon number 13
gene id AMCG00014397
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 12850007 ~ 12875536 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cgggcacAGAGTTAAGGAAGCTGGAGAAAGATAGTGAAGGCAGGATGATGTGAAGGAGGTCGAGGCAGGGAGCTACACAACTATACGCAACTACTGTCATTTAGACCCAAACCCTTCATTATGCATTCGGACTGCAGGCTGGAATGGCCACAGTGGGAATGGTGAGAGCTGACACGACCGGGGCAGCGATCTTCTTCATTTCGGCATTCATCACCATCCTGAACACCAGAGGGACCAGAGCACAGAAAGgtGATGGCTGTGGCTACACTGTTCTTGGCACTAACAGCGGGACTCTCTCATCAATCAATTACCCCCAGACTTACCCCAATCATACAGTCTGTGAGTGGGAGATCCGTGTCAGTCCTGGAAAGAGAATTCATTTTAAGTTTGGGGATTTTGACATCGAAGACTTGGACTCCTGTCACTTCAACTACTTGAGGATATATAATGGCATTGGGACAACAAGGAGTGAGATAGGTAAACACTGTGGGCTGGGTTTGAAGTTGGATGACCTCATCGAGTCCAGTGTGAATGAAGTCACTGTGCAGTTCATGAGTGGCATGCACAGGTCTGGACGGGGATTTTTCCTTTCCTACTCCACCACCGATCACACAGATCTCATCACCTGCTTAGATAaaggaatttatttttctgatccAGAATTTAGCAAATACTGTCCTGCAGGATGCCGCACTTCATTTGGGGAGATTTCAGGGACCATCCCCCATGGCTACAGAGATTCCTCCTTGGTGTGCATGGCTGGTATTCACGCTGGGGTGGTGTCCAATGTCCTCGGGGGACAGATCAATGTTGTCAGCAGCAAGGGCATCCCATATTATGAAAGTTCACTGGCCAATAATGTGACTTCAGTTGTtggTTCCCTGTCTAACAGCCTTTTTACTTTCAAGACCAGTGGGTGTTATGGGACCCTGGGCCTGGAGGCGGGAGTTGTGAGGGACTCCCAGATCTCCAGCTCCTCTGTGTGGGAGTGGACTGACGTCAATGGACAGCTCAATGTGTGGGCCCCTACAGGGGCCCGTCTCAAGAAGCCCAGTATTCCCTGGTCAGCCTCCCACAGTGACCAGAGACAGTGGCTGCAGGTGGATttgaagaaagagaagaggatAACGGGAATCATAACCACTGGATCAACTCTCAAAGATTACTACTACTATGTGTCTGCGTACCGCGTGCTTTACAGCCACGATGGGCAGCACTGGGATGTGTACAGGGAAGCAAACACTGATCAAGACAAGATTTTTCAAGGAAATGCCAATTACCTACAGGAAGTACGGAACAACTTTATCCCTCCCATCGAGGCACGGTTCCTTCGGATTAACCCCGTGCAGTGGCACCAGAGGATTGCCATGAAGATTGAGCTGCTGGGCTGCCAGCCACACACAGGGAGGGCTGCTGCCCCCCGTTTACCACCGAAGATCAGCACTGACTTCCCTCTCCAGTACGGCAAGACGACTCTCACACCAGACGTCAGGAACACAACAATGACCCCCAACAGCAAAGGCTGGTGGAAGGGCATGAAGCAGTTCTTGCCAACGAAGGGCTCTGAGGCGGAGGAGTCCCCGGTGCGCTACAGCAGCAGTGAAGTGAGCCGCCTCCGAGGGAGGGAAGGGGCACCCGTGTTGCAGGCGGAGCCAGCAGAATATGCCCAGCCCTTGGTGGGAGGCATTGTCGGCACCCTCGGCCAGCGGTCCACCTTCAAACCAGAAGAGGGTTCCGACCCCGGCTACACAGAGCCTGACCCCTATGATGCTCCCCTGCAGGAGATATACCACGCTTATGCCCAACCCCTCCCAGCATCGGGGGCCGAGTATGCCACTCCCATCATCCTTGACATCGCCGGCCACTCGGCAAGTGGTACCTTGAGCCAAGTGCCAATCTCCACGTTCAAGGCTCGGGGTCCAGCATCTGTTCTGTCCAGGACAGACAGCAGTCCATCCTCGGGACATGCTCAGTATGACACTCCAAAGGGTACGTCAGGGCAGGGGCCCACGCTGGACGAGTATGTCTACCAGGTTCCACAGAACAATGTTCAGAAAGCAGCCGACAATGGCTGAACAGTGCCAAGGGGAGTTCCAGCCTAATGAATGTAGCTCACCTAGGCACGGGGTTGGGCAGCCTGGACTCTCCCAGACTGGCGTGTTGCTGTGCTGGGTTCCTGCCTGGTCTTTCCCTAGTAGGACCTCCTTTCAAGATTTCATTCGGACAAAGCTCAATGAAAGCCAAGGCTGAAGTCCCCAGATCTAGGTCTTGCtcatttttaaagcacactACCTTATTTTATGGTTTGATATGGTGTACGCATACCTGTTTATGCACAGTGAATTCCATTGCCTTTAGGAAATCCTTCCATTCCAGTCCTACCACTGAAGCAACAGATGTGAATGTTAGCCAAGGGATATGTCACTGCTGTGAGACCAGAAGgtttaaaggttttttttttttttttattggtttggGTACCTGTGACAAGTTTCTTCTGATGTCAGATTAAGGACTATGTTCAGATGCTTAGCTGAAAAGGTTTCCTTATCATACACGTGTCATTTGTTTTagaactgaatttaattttggcagctttttaattttattttattgagacTACACATACAGACACTGCTTTGACCATAGACCTATAGAGAGCACTGCTGCCTGGACCATCTGTCCTGGCCTTCTTTCTCAGATTGCAAACCACTGTGAAGAGGTGACCCACCGCACACTGTGTAAtctattgcttttttaaaataaccattcaaggattttgttattgttactaaAGTATATATACAGCTAGTGCTGCCTTTACTGCCTTTCTGTAGCTATGCTCCAGGACTGGTATTTGGTTtaattgtacaaatatatatttgcaaggCAATGGAAACCATCGTTAACAATATGCAGGAAAGTAACCTTTAGCATGTCTTTTATATCGAGTTCTGGATAGAGATGTGTTCAGTGTgatcatttaatatataatgttttgcaCTTTCTTATAGCAATTTACTGCGAAATGCCACTTAACCATTTGTGCCATCAAGGAAAGGCAGGGTTTGTTGGTGTCAATTAATGTTGCTTTATCACTGCCTTGGTTTTCAAGTAAGGATAAATCCTATCTGGGCTTTATTTGGTATTTATACAGGAAGTGtgtacatatttgtgtgtgtttgagtatTCATGCTGTACATGGACTGAAATATAGGTGTATACACTAGTATCTCTGTTCACACCACAGAGAAGAGCTACTGAGACTGTTTTACCAAATCTCCTCATagctttttcatttgaaagtttaaaaacttTGGGAAATGATCTTCAGATTTCAAATTTACCTCCCATTTATGATTTCTACTCAGTCAATTGTTGGTTTTGTGATTTGTCTAATCTAATAGAATGTTTTCAACCACCTACCAGGTGAGCATGAAAACCCTGTGTTTTAGCAGACAAGCTAGGTTATCCCTACAGACTGCTTTATACTAAGGTTCGCCAGAGGATGACATACTtaatatagaaagaaaatacaatagcTTGAGATTAAAGGAACACCACCTTTTAAGTGTTGTTCATACAAAACCAGTTCAAACTCAGTggtttataataatagtaataattcattctgtggtttgttttctatCTCACTGTCTACAGTAAGTCATCGATCTAGAGTCTGAGTTCTTTTACAAGAAGTCTTCATAATCCAATATAATGCGCAATATAATGAACGTTGATCTTGGGGCCACACAATCATGGCACACATTTTAGAAAACCAAAGGATTTATACGTGTCTCTTGCATTTATACGCTCCACCTGGAGGGCAGTGCGAGTCTTACAGTCTGGCAATAGCGGCTTTGAACACAAAGGTCCATGATCCTCTCTGCATGGCCTGGGGTTCGGAGATGCATAACTGGGTAGCAAAGGGAAAACTAGAGAGTCGTCAGTGATTTTTGATGTACAGTAATATAATTATACTTGCACAAACCAGTCTTTGGTGTTCAGTTAATTGTGAATAGCAACTACATTCCAGATGTTAGACCAACACTTCTTAACCAATCATATTTCCAAATTATACTTAATATCATTGAACTGCTTCACAGAGAGATGTCTGTCAAACAAAAGGACATGTTCCATTGAAGTCAAGGAATATCCTTTTGTATCCAATGTGTCTCAAGTGTTAGGCAGctaaacaatgttttccttgTACTGACCACAGTTGAACTACAAGTCTATTATCTGTCTATTATTAGTCAAAATCACAGCTGGTAAGTCATTGCTCCAGACTTGACTGTGATGCAGATGAGTAACAAAACCAGAAATTGACCAGTACTCTCTCCTTACCACCACCACAATTTAAGACTGAAGGGGAACTAAATTAGGAACACATTTCAGATAACTCAAAAGATTCCAACCCCTGCTCTGTTCAAACAAAAGCTTTTGAATTTGGTGGTAAGAGCTGCAGGCAGGGGGCAAACCAACACACCCAGGTGCATTATGGACCATCTCAGTTCTCAGCATTGCTGGTGGTGGTTGACTTTAATTGAGGAAGCCAAGACCAGactgagcaaaggctgtgatgACTAGGATTTTACATGCTGTGGGTCAAATCAGTTTGCTAGATTTTTAAATCCATGGcaatttacactgtatttattattattaaagatgtCCTTATAGACAAGTACAGAAGactgtttaaaatgcagagaGCTTTGGCATCCATTTGAACACTTTTATCATCATACATATTTACTGTTTTCCTTGTCATGTCctgctgtatttttcttttaacggTGTGCTATGAGGTGCTtccaaaaaaatgtaactttggTATGAAAACGGTAATATTGACACAAAGCACAGCATCCAAATGTTAACATGTCATGGTTTTGCAATTTGCGCCCTAGGTCATTCTCATTGTCCATGTTTAATTTCTTGTGTTAATTGCAATCTGTAGTGCTGGGAATGCATGTTAGTGCTTACAGATATATGGACGGTATGAAAGCTGTCCTTAGGATTCAAGCAGCAAACTCATTCAACAAAGAGGAAATAGTGCGTGTTCAGACTATCTGTACAGTGTCGTAACCATTTCAGTGGACAATGTGAATCTAAATCATGCCATACATGTGCAAATCCTACtgcgtgttttttttaatgctttacatCCGAGACATGCAAATTCTTTGACACGCCTTCCCTTCACTCTGATTGTAATGGGTTTCTTTCTCAGTGGATTTCTAACTGTGGTTGGGGTAAAATGACAACATAGTTTGTGCATGTAGgtgaaatggaaattaatcaCCTGTCTGGACAAGGGTTTCAGTTAAGGGTGAAGCTCTTAAAGAATGTATCTCATCTTACCTCGGCATGTACTGTAGTCActctgtatttgtatatgttggTAGAGTTTAGATTGTatagagaggaaaaataaattttaaaatgttttatgtatgatttaataaatttttttaaaagctgcctGGACCATGACACTTATCATTTTCTCTCGATAATGTGTtcttagttttaaaatgtaatttccgtTAACAGTGCTATCCAAACAACTAATCGGACATGGCATTGTACTACACAAGGATTTGAATGGGGTATATGCTTCATTCTAAAAGAAACTCCAATaacagctttattttatatgacaAGCAATGGAAATGTTTAGAGTACGC

Function

GO: NA

KEGG:

id description
K24794 DCBLD; discoidin, CUB and LCCL domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87141 lncRNA downstream 969551 11879097 ~ 11880456 (-) True G69759
TU87123 lncRNA downstream 1078614 11769690 ~ 11771393 (-) True G69743
TU86933 lncRNA downstream 1712921 11132788 ~ 11137086 (-) False AMCG00014365
TU86856 lncRNA downstream 2028935 10815771 ~ 10821072 (-) True G69539
TU86853 lncRNA downstream 2053818 10795883 ~ 10796189 (-) True G69536
TU87239 lncRNA upstream 94717 12970253 ~ 12970555 (-) True G69849
TU87308 lncRNA upstream 209827 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA upstream 209827 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA upstream 209827 13085363 ~ 13086345 (-) False G69896
TU87328 lncRNA upstream 212072 13087608 ~ 13096336 (-) False AMCG00014412
AMCG00014396 mRNA downstream 69169 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014395 mRNA downstream 110342 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014389 mRNA downstream 123363 12721742 ~ 12726644 (-) True AMCG00014389
AMCG00014391 mRNA downstream 650817 12197039 ~ 12199190 (-) True AMCG00014391
AMCG00014390 mRNA downstream 846198 11984073 ~ 12003809 (-) True AMCG00014390
AMCG00014398 mRNA upstream 31868 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014412 mRNA upstream 212126 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014411 mRNA upstream 299675 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014408 mRNA upstream 333209 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014413 mRNA upstream 366290 13241826 ~ 13242652 (-) True AMCG00014413
TU87063 other downstream 1187514 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2051860 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3532840 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4465783 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 4691417 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15454203 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16513754 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19387631 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19721926 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19721926 32597462 ~ 32619149 (-) False G73127

Expression Profile