RNA id: AMCG00014410


Basic Information

Item Value
RNA id AMCG00014410
length 5037
RNA type mRNA
GC content 0.53
exon number 11
gene id AMCG00014410
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13251935 ~ 13260989 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTCAATCCCATCCGCCCCTGCAAACGTCACATCCGCTTGTGCAGCAGCCATTTTGTCTGTTCGTGCAAGTCCGTCCCTCACGGTCAAAAACTGCAGTTCCCCCTTTAAAAACAcgattattttcatttttgtattgcatgCTTCTCTTTCTATGGAGATCGAAAAGGGGTGAAAAACTAAACCAGATCATTCATACCAGGAATAGATTGTTCCCTTGGCGCTTACAGTGTGCTTTTGGTTGTCGAGCCGTTTGTTGCGGGTGGTGGGGGCATGTCGAGCGAAGAAAGCTACCTGGCGATACAGCGGTACCTGACCGATGAACGGGAGCCCTACGCCCCGGGGACGGAGGGCAATGTCAAGCGAAAGATCCGGAAAGCGGCCACTTGCTACGTGGTCCGAGACGGGACTCTGTATTACCAGCGGCGGCACAAAGGCCAGGAGAAGTTCACCGAGCTGGAGGTGGTGCTGCAGGCCGGGCGGCGGAAGGAACTCATCGATGAAGCGCACATCACCGCCGGAGGAGAGCACCTCAACCGGCACCAGACCTGGCACACCATCTCTCAGAAGTACTGGTGGAGGGGCATATTAAAGCAGGTGAAGGATTACATCAAGGCCTGCAGTCAGTGCCAGGAGAAGCAGGAGCGCTCACGAGGGTGGACTGAAGATGTTGCTGTGGAGGGGCTGGGGAAAGGAGGGCGCAGAGCTGCCCAGGAAAGtgacgaggaggaggaagagtcCAGTACTTTTGAGGCCCAGCCCAGCAGCGCCCCCACCCACAGGACCCCCAGGCCCTGGAAAAATGTTGCCAAGCATGAACTGGTCTTTGTGGACACCAAGGGCATTGTGGACCAGCACTCTCCCAAACATGGTCAGGCCATGCTGGACAAGCTCAACCAGCAGCGCCTCAACAACCAGTTCTGTGACATCACCCTGCTGATTGAGGGGGAGGAGTACCGGGCTCACAAGTCCGTGCTGGCAGCCTGCAGTGCCTACTTCAGTGAGCTCTTCATTGAGAAAGGGGCTATCTCGAGTCACGAGGCTGTGGTGGACCTCTCGGGCTTCAGCAAATCCAGTTTTCTTCCCCTGCTGGAGTTTGCATACACCTCCAGCTTGACCTTCAACTTCTGCAGCATGGCAGAGATTGCCACGTTGGCCCGCCACCTTCTCATGGTGGAAGTGCTGGAGATCTGTGAGTTTGTGCACAAACAGGTGGAGGAGAAGAAACTGATGGTTTATCAGAAAGGGGACGTGCACACTGTGGTGTCCTCCGAGGCCTTGCCCAGCGAGCTGCAGGGTGCTGAGGCAGCCCCTGAGCCCCCCAGAGAGGTGGAAAGGGTAGACGAGGTGAGCAGGGAAGAAGGGGCTTTCGTGGTCCCTGTCCAGAATGATTCCCATTCAGAGATTACACAGAGCGAGGAAGCGGCGGAAATGGAGCAGCAGCCTGTGGTTACGACCACCTGGATAGCTGCGGAAACCCAGGTTGTCGACGTCCCAGCAGCAGAGGTGGATTTGGCAGTGAAAGTCCAAGAGCCCGATGCCTTTGTGATCAATGTGGACCCTGGCAAAGGGGCCTCCACAGAAGTGGTCCACCTTGCAGCGGCCGCACCTCCTGTTGTGGAGGAAGAGAAAGCAGGAGTGGAGAAAGAGGGAGCTATCGCTGTCGTTGCCCAGCCACAGACCCCGGAACCTGCCCCTCTGGCTCCGAAACGGAAGCGTGGGAGGCCAGCCAAggtgaagcagcagcagcagcagcagcagcaggaggtgGTGCTGGTGGAAGAGGCCGAAGACACTTCAGAGGTCATCGAGGTACTAGAGTATGGAGCGGCCCCCGAGGAAGCGGAGAGCCCCGCCGACGATTCCTACAAGAGCCGACTGCGCCCGCCCTCGCTGGGTGAGGGGGGGTACATCCGCCTGCACATGGGCTTGGAGCGGAAGCTGCAAGGCAGGAAGGGGAACCCACGATCAGCTGTCCAGAAGGCAAGTGTGGCCCAGCGGCTCGTGAAGCGAGGCAGACTGATGCAGCCTGTGAAGAAGCCAGCGGGGGAGCAGGACACGGTGGGGGACAGCGAACACGTGTGCTCCGAGTGTGGGATGGTCTTCCAGCGCCGATACGCCCTCATCATGCACACGCTCAAACACGAGAAAACCCGCGGCTACAAATGCACTCTCTGCAATAAGGAGTTCCAGTATGCGGCCTCCCTGCGTGCTCACCTGGCCCGACACAAGCGCAAGACCCACAGGACCGCGGCCACCAGGGAGCCGGTGGAGGAGGATGGCGACGCCAAGGGAAAGGGCCGGACCAAGAGGGAGTTTGTGTGTGACATCTGTGGGAAGACCCTGCCTAAGCTGTACTCGCTCCGAATACACATGCTCAACCACACCGGAGTTCGCCCCCACACGTGCAAGGTGTGTGGGAAGTCGTTTGCCCACAAGCACAGTTTGAAGATGCACAGGTCCCTGCATGACGCCCTGAAGCAATTCCAGTGTACGCTGTGCGACAAGTCCTTCGTCACCAAGCGCAGCATGCAGGAGCACATGAGCATCCACACGGGAGAGTCAAAGTACCTGTGTTCAGCGTGTGGAAAGTCATTCCACCGAGCTTCTGGACTCAGCAAGCACTTAAAGAGACACCAACCCAAGCCAGAGGTCCGGGCCTTCCCCTGCACACAGTGTGATAAAAGCTTCTACGAGTCCAGGGACCTCCAGCAGCACATGAACAAGCACTTGGGCCTGAAGCCGTTCCAGTGCCAGGTGTGTGGGAAGTGCTACAGCTGGAAGAAGGACTGGTACTCCCATGTGAAGTCCCACAGCGTCGCAGAGCCCTTCAAGTGTAATATCTGTGGGAAGGAGTTCTACGAGAAAGCCCTCTTCAGGAGGCACGTGAAGAAGGCCACGCATGGCAAGAAGGGCCGTGTGAAGCAGAACCTGGAGCGGGAGTGCGAGCACTGCGGCAGGAAGTTCACCCAGTTGCGGGAGTACCGCCGGCACATGAACAACCACCAGGGTGTGAAGCCATTCGAGTGCCTGACATGCGGGGTGGCATGGGCAGATGCCCGCTCCCTGAAGCGCCACGTGCGCACTCACACTGGGGAGCGTCCCTACGTGTGCCCGGTGTGCCAAGATGCCTACATCGACGCCCGCACCCTGCGGAAGCACATGACTAAGTTTCACAATGACTATATCCCTGGGAAGATCATGCTGGAGAAAGACACGCTCCAGTTTCACAACCAGGGCACGCAGGTGGAACACGCCATCAGCATCATCGCCCCGGACCTGCCACATGAGCTGCGGCCGCCCGAGGAGGAGCAGGTGGGCGAGGAGATCGAGACGGTGCTGGTCACGGAGGAGACCATCGAGGCGGTGCAGGCTGTGGCAGCCACTGAGGAGTGTGGCACCGTCTCCACGCTGTCTGACCAGAGCATTATGCAGGTGGTCAATTATGTCCTGTCCCACCAGCAGGGGGGCACCACTGGGGCCAAACTGTCAGAGGAGACTCCTGATGCCATCCAGACAGTCGAAGTAGAGGTGGCCCACATGGCAGAGGCAGAAGCAGAGTGACCTCGAGGCTGATTCTCCCTAGAATGAAGAGCCTCGGCGTGGATGGCTTCTCCCAGACAGAACTGACATGCTTACTTCTTCCATCGCACTTCGGCTCCagcagctgcagtgtgttcCTGACTTTGGGCCCAGTAGTGCTATAAGATCAGTGTCCATGTGTGGGGCAGTCTGGATCAGTGACTGGAATCTGCTTTTCCTGAGTGGACTCGGAAAGATGTACAGCACTGGCAAATGAACCTTAGAAGGAGTAGGCTGTCTGTAAATGTGGTGTAAAtagttgtgcttttttttttttggaacaaGCCTACAAGGAATGCCTTGGTATCTGAGGAACTGCAtaattttttccacttttttttttttggttgtgcGTGTGAAACCTTAGCTCTAAAACTGTGTATATAGCTGTCAACGCATAAGTGACATCATACATGTGCTCTGTAATCATGTTCTGCAGAATAATTATGCACATCGGGGTCTCACTCCATTCCTGGAGGTCTACTGTGTCTTCAGGTTTTCACTCCAACTGAAGCAGTCAATTACTTCTAGTTATTTTAACAATTAGActtaaacaatattgttttaaggtCTTTTGCAGTTgagtgtaaaacattttgattgtgtTCACTACCTGTAACATAATATGCAGCCTGTATAGAACCATTTAAATCTAGTTTAATTAGGGCCAATTAAATCACCGGGAAGTGTGCTGGAACAAAAGCTAGGACAACCCTTTGGCCCTCCGGGTATTGAGTTTGAGCCCCCCCCCCAATGTTCATCTTACGAGGACATGTATACGATTTCCTTTTTTGGTAAAGACTTCTCCGTTACAGAGCTGAGACTTTAGCTTTTCCGTAAAActtgaattttgttttgtttttataattttttaggACCTTGTGTGGCCAAAGACATGTCTAATGTTATGCAGAACATATTTGCCACAGGTAATAGGCAAATTTAGCATTGCtggaataaaaactaaatcctTGCAGTAGAAGCATTTAAATGGTGTGAAAATAATGGTCTTTATTCACCAGTAAGCCTCCCTTGGATGTTTTGAATGGAAAGGTTTGCTCATTTTGTCTTTAGGTAGCTTGCAAAAAAAGAACTCATTCCAATATatcagtgaaatgtattttatcagtgaaggcttatgtaaaattaatttgcaGATTGTTTGGTGCAGAATAATTAACCTTAAACTGTGAAAAGGGCTGCAGTTATTAAGGGGTGTTGACTCTACCATACTGGCTTCCAATAGCATGTTTGTATGTGGGGAAAATATATTcaagtttttctttctgcttgtAAAGTTTGTAGGTTGGTCTCCATGatgaattaaaaaaggaagaaaaagacaaTTGTGTATCATTAAGTGTTTTGGTCTCCAGACCATTGTGATAGAATTGAAATGGATGAGTGGTAGACAATGGATGGTCATATCAAACATGTATCATTAAAGGCACAGAGCAC

Function

GO: NA

KEGG:

id description
K10498 ZBTB11; zinc finger and BTB domain-containing protein 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87328 lncRNA downstream 155599 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 165590 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 165590 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 165590 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 281380 12970253 ~ 12970555 (-) True G69849
TU87397 lncRNA upstream 40935 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 43437 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 362126 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 433768 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 498237 13759226 ~ 13761420 (-) True G70091
AMCG00014413 mRNA downstream 9283 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014408 mRNA downstream 14407 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014411 mRNA downstream 48128 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014412 mRNA downstream 118184 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014398 mRNA downstream 269440 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014409 mRNA upstream 1390 13262379 ~ 13265549 (-) True AMCG00014409
AMCG00014437 mRNA upstream 116673 13377662 ~ 13408576 (-) True AMCG00014437
AMCG00014434 mRNA upstream 182281 13443270 ~ 13473171 (-) True AMCG00014434
AMCG00014432 mRNA upstream 217359 13478348 ~ 13487613 (-) True AMCG00014432
AMCG00014438 mRNA upstream 237737 13498726 ~ 13527602 (-) True AMCG00014438
TU87063 other downstream 1589442 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2453788 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3934768 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4867711 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5093345 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15068750 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16128301 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19002178 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19336473 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19336473 32597462 ~ 32619149 (-) False G73127

Expression Profile