RNA id: AMCG00014411


Basic Information

Item Value
RNA id AMCG00014411
length 4452
RNA type mRNA
GC content 0.48
exon number 17
gene id AMCG00014411
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13175211 ~ 13203807 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTTACGCAGATggtttacaaacacaaaatgaacagGTGAAGTTGCCGGAAAATGGCAGGATACTATTTAGTCCATCAAGTGTTCAAAGAGCACCTCCACTAAATGCCTTCCCAAGTCCAAGGGGAAAAAGAGCAGCCATGTCGAGGAGAAAACGCAACGTCCTGTTCCCCAGTGGAGTCCAGGTTTGTCCACAGGACACTGTTCAGCAAGCCATTACAAACCATCTGAAATACTTCAATCTCCGAGTGTGCCAAGAAACAATCTGGGAGGCATTTAAGATCTTCTGGGATCGACTGCCCGACCGTCAGGAGTACATGGGCTGGATGAAGCTCTGTCAGGAAGGGACCATCAATGTCTTTGAAATTGGCGCAAACTTCAGTCAATCAGAGGAGCATCTCCATTTGGTTCAGATTGTAAGTGACCCCTCCCTCATCTCTAGAATGTCCCTCTCATCTCCCAGAAGctCACAGACGCCAGTCCCTCCTACAACATCCGACACCATCACAACTCAAAGAGATGAGGATGCCAGTGTACTCTGGCCACATATGGTCACTGAAGAAGTCACCCTAGCCAGCGGGAATAGTGTGATCGAGGAGACAGAAGGCAGAATTACCAATGAGATTGAAATTGACATCACAGAGAGGCCAGCCAGGCCGCTAGCAGAGCAAGTGGTGCATCTGAGCATTCAACTGACAGGAGAGAGTTACAGTGAGGACCTGAAAGATCCATCCAGCTCCCATTACCAGCAGTTGGCCCAGCAGTTCACTGAAAAGattgtaaatgcatttgagAGACTGCCAGGGTTCAAGATGGTCAATGTGCTCGAATTCAGGGGCAATGCGGTGGTGGTTCATTACACTGTGACGTTCGAGGTGGGCTCTGGCGGAATAAGCAATGAGATCATGGACTCCATTAACCTGAAGTCTAATATGGTGGAGGCATCCTACCCTGAGCAAGACGAGAGCCCCACTGTGGTTCACACCATCACAGACTTACGCAACTACATCACTGAGGCCCTGCAAAACCTAATCGGGAACACCACATTGGCCGTAGACCCGGACTCTCTGCAAATGAAAAACGTGGATGATCAGTTGTCACCACTTCTTGACAACAATGGCCAAGGAGGTACAAGACCAACCATCGGACCAGATGACAACTTAGACAGCATGGACAATATTCTGGCAGCTGAGCGACCTCCTGATACCCCTTACCAAGAACTGTCCAGCAATGACATCTTCGTCAATGACTTTAACAAGGAAGACTTTAATTTTGACCCTGCGCACCCAAATGACCTATGGCTGGGGTCTCAGAACCTTCAGGCTGGGGAGAATGATGTCATCATCCTGGAAGAAAGCCCCACTCTGCTGCCAACTTACCTCCCAGACCCGCCCCTCACATTGAAGCCCGAGTCCACATCTGGAGCAGACACTTCCATTATAACATCCCTGCCGGGTGTAGAGGatgatCACAGTGTCGAGGAAGaaggcttcattttcagtaacaCATTAGTGACAAAGCAGACACCAACAGTCGGTCCAAATACAGTTACTGCTCTTGATGTGGATGATCAAACCACCCTGCCGCAGTTGTCTACAGCCTCGGTATCTGATGAAACAGAGGTGCCCACAACTACAGCAGCTGCAGAAACTGGTTCAGTTGAAGATGTAGAAAATACTGGTTCTGTGTCAGACTGTTCAACTGTTCCAACCGAGGGCCAAGAAGGACTGACAACAACAGAAAGTGTGCTTTCCATCCCTGCTAACATACAGTCTGAAGTTATAAGTGTTCCAGCTCCAGTGTCTCCCACACACAGTCCCTCCAAGTCTTCTTCAGCTGATGAACCCTCGATGACTGCATCAGAACAGCCAGATGTGATATCTCCTTCTCAAGACACATTTCCTCCAACAGCCTTCACTGATGAAGCTTCAATGGTTACAACAAAAGAGTCACCTGACAATTTGTTTGACCTGGGCTCTGGGTCAGGGTTCTTCCATTCTGGACAAGAACAAGGACCTGATGTTTGGCCATGGCTATCTATGACCTCAGATCCAATTTATTACCCAGAGTCAGAGAGCACACCACCCACAGATGATGATTCCTCATTATctacaaatgtgaaaattacAGAGGAATCCCCTGTATCTGACAAGCCATTTTTGGACAGGGTTCTGATGACTGAAGACATACGCAATGTACCCCACTATACCACCACTGATGAAGCCCCGGTTTTCTGGACTATGGAGACACTGACCGTAGAGCTCTCTATGCAAACCACTGAGGCCTCTGGCATGGATTATAACTATTATGCAAGTGAGGCATCTACCATGGTGTCACCTATCACTGATTATCCGCTTCCAGAAATAAAGTTGGTTGATTCCACCACTGCAGCCCCTGACTTAGAGGGACCAATAACCATAGGATTAATTGTGACTGAGGGGAATTCATTTCACAAGAATGACATATTTGAAACCATCCCAGAAACGGAGCCAATCACCTCAGCTGGAAAGGTACCAGTAGGGCCTGTTACCTTGGCTCCCTCAGACACACTTTATTCCACTGAAAATGGCATTGCCCCAGTTGGGCCCAATGTGGAATTGTTCACCATAAAAGAACCTGTCATAGAGCTGGGCACGGAGGAGCCTGCTGTAAATGGGCCTTTCACAAAGGACACCCCTTTCCTGGACACTGAAGATATGAGTCCAGGAGATGAAGAGATTCACATTGTAGAGGAGGTGGTGACAGAATTCATGGAAACAATCACTCATACTACTTTCAACTCTATAGAAGATGTCTATGATACAGAAATTATACCTGTTGCCTTGCCCACCAAAGAGATAACAGACACAGAGACCATAAGCACTTCTCAGTCTATAACACAATCTCCTCTACAGGATTCACTTTTCACTAAAATTTCTGCTGTTCTGCCTCCAGAGGAAGAATCTACCACTGTACTGACAGAGAAACCTGATGAAACTCCATTAGAGACAGATGTTTATTTAGAATCAACCTTATCCCCAGATTTAATAGGCACGACTGGTGGTGATGATTCCGTTAGTGAAGTGAATCATTTCACTACAATACATCCATTAGATCAGTCAAACACCAGGCTGATGGATGACATAGCAGTGAGTTCAGAATCATCTAGTAAGGACTTCCATGAGTTTAACATCACACAAAGCCCCGCTGTCGTAAGTCCCACACAGCCTCAACAACCAGCAGAAGATGGTACACCAACGCAAGACATAAGACCACTTGGACCAGACACCACCAGTATCAAAGGCCTTGACATATCCATTGAAGTGTACCACCACACAGGGGTGAGTCACACTGAGGAAGAGAGCAGTGGGCACACCTCCGTTAAAGCTCGTGCTACAGACATGGCTAGTATAGCCATGCCTACCAATAGGAATTCCACTACCCCCACCCGGGCATTGATGGTCTTCTTCAGCCTCAGGGTCACCAACATGATGTTTTCTGATGATCTGTTCAATAAAAGCTCAGCTGAATACAAGGCTCTGGAGCAAAGATTTTTGGAACTGCTTGTCCCGTATCTGCAGTCCAACCTCAGCAATTTCCAAAACCTCGAAATCCTCAACTTCAGGAATGGCAGCATTGTGGTGAACAGCAGAATGAAGTTTGCTAAGCCTGTCCCTCGTGACGTCACTAATGCAGTCTATCTCATTCTCGAAGACTTCTGCAATACAGCCTACCAAACTATGAACCTTGCAATTGACAAATACTCTCTGGATGTTGAGTCAGGTGACCAAGCGGATCCCTGTAAATTCCAGGCCTGCAACGAGTTTTCCAAGTGCACAGTGAACCGCTGGTCAGGGGAAGCCGAGTGTGTGTGCAATGCTGGATACTTCAGTGTGGATGGACTGCCTTGCCAGAGCATCTGTGACCTACAGCAAAACTTCTGCTTGAATGATGGGAAGTGTGATATTATCCCAGGGCAAGGAGCAATCTGCAGGTGTCGTGTAGGGGAGAACTGGTGGTACCGCGGAGAACATTGTGAGGAGTATGTCTCCGAGCCACTGGTCGTCGGCATTGCCATTGCCTCAGTAGCTGGTTTCCTGCTGGTGGCCTCGGCTGTCATCTTCTTCCTCGCCAGGACACTGCGGGACCAGTATGACAAGGAAGACACTGAAGACCCAGTCAGACGTGGGGAAAGTCTGGCCTCCACGGAGAAGGCAGTGAAGTACAACCCGATGTATGAGAGTGACGCCACCACTGGCTACAGCCATTATTACAGACGCTACCCCCAGATACCCTCTTACAGCTCTGCCAGTGCGGAGGTCTCGACTGACTTCAGCAGCGAGGAGATACGGCACATCTATGAGCACAGCGAGCTCACCAAGGAGGAAATTCAAGACAGGATACGAATCATAGAGCTGTATGCCAAAGACCGTCAGTTTGCAGAGTTTGTGCGGCAGCATCAAATGAACATGCCT

Function

GO: NA

KEGG:

id description
K19017 IMPG2, SPACRCAN; interphotoreceptor matrix proteoglycan 2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87328 lncRNA downstream 78875 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 88866 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 88866 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 88866 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 204656 12970253 ~ 12970555 (-) True G69849
TU87397 lncRNA upstream 98117 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 100619 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 419308 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 490950 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 555419 13759226 ~ 13761420 (-) True G70091
AMCG00014412 mRNA downstream 41460 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014398 mRNA downstream 192716 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014397 mRNA downstream 299675 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014396 mRNA downstream 394373 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014395 mRNA downstream 435546 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014408 mRNA upstream 4938 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014413 mRNA upstream 38019 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014410 mRNA upstream 48128 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014409 mRNA upstream 58572 13262379 ~ 13265549 (-) True AMCG00014409
AMCG00014437 mRNA upstream 173855 13377662 ~ 13408576 (-) True AMCG00014437
TU87063 other downstream 1512718 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2377064 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3858044 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4790987 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5016621 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15125932 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16185483 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19059360 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19393655 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19393655 32597462 ~ 32619149 (-) False G73127

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000015_07024917_07047037.mRNA True 7736 mRNA 0.44 16 CI01000015 7024884 ~ 7047037 (-)