RNA id: TU87328


Basic Information

Item Value
RNA id TU87328
length 2160
lncRNA type sense_over
GC content 0.41
exon number 8
gene id AMCG00014412
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13087608 ~ 13133751 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCAGCAGGTTTGACGTGGGTGACAACTCTTCCATTTTCAGTTCCCATCCTATATCTGAAGTTGATTCATTGGGACAGAAACGCTTCATAGCACCTCATGTGGTGTATAAGGTGGATAAGAAGCCAGACGAGCCTTGCTCCATCACAAACTCCCTCAATTATTTCCCCGATGAGGAAGCCACTGAGCAGAACATCACCGCGCCGCCCAAGTACCCACCTTCCAACCTCACCGTGGTGACCGTGGAGGGCTGCCCTTCCTTCGTCATCCTGGACTGGGAGAAAGTGGACAATGACTCAGCTACAGAATATGAAATAATCTCTACGACAAAGGGTCCAAAGGGTGAAGAGAAATCCATCGTGGTCACCAACCAGACCCATTCTCCTGTGGAAAACCTGAAACCCAACAGCAGttaTGAATTTAGAGTTAAAGCCCTTAATGATCTTGGAGCTGGCCCAGTCAGTGATGCAGTGTCTTTCAGCACTGAATCAGCGGACCCCCGTGTGAGTGAAAACCTCTCAGGAAAAGATGCGATCTGGACACAGTTCCCATTCAAGTCTGACTCCTATTCCGAGTGCAATGGAAAGCAATACGTGAAGAGAACTTGGTATCGGAAGTTTGTGGGCGTCCAGCTGTGCAACTCCTTGAGATATAAAATTTATCTGAGTGACTCCCTCACAGGGAAGTATTATAACATCGGCGATCAGACGGGTTATGGGGAAGACCACTGCCAGTTTGTAGACTCCTTTTTAGATGGTCGTACGGGACTCGTGCTCAGGGGTGACCAACAACCCCTTAGAGAAGGTTTTTATCGATCTGTCCGCCAGGAACCGGTTCACTTTGGGCAAATAGGAGGCAACTCTCATATTAACTACGTGCCCTGGTATGAGTGTGGGACGACAATACCCGGAAAGTGGTAGAATCAACGAACTGGGGGGGGGGTCTAGTGACAAGTGTAGGATAAGGGGCAATGGGTATAATTGGTGGCGGTAAGGAGGTGAAGGGATCAGGGGTGGATTATCTTTTATTATAACTGCATCCCTGCCATGTAAACCTCAGCCTTTCTcatgtataaaatgtgtataagaTCTTATGCATCGAGAACTTTATTGagtgtatttgtaatatgtaatactTAAATCGCTACATCGTTATTTATCAAACgtgacaggaaaaacaaaaaaaacgtgaTCAAAAAAAGGCACATCAGAGGAATCGTGAAATGCATAagtaaatagaataaaatattggGAAGCTGGCTCCCTGAAACTATTTTGATaacttgtatattattatttatcaaaatgttgtattaaatgTTCCTTCTGGTGGTTTATCAGCAGTTTAGGGAATGGACTACGGTACAGTGCTTCAGTAGAACAGTTAATGTGTCTCATATTGACATGGATAGAGATCCCAGTAAGTGTTGCACActataaatgcatttcttacaACACATACCTACAGCAGAGTCGTAAAGATGGTCAAATTCACACATGGGCATGTCACGACACGCTCCCCTGAGACATGGGCACAGAAAAAGCACAGTGATGTACAATTCTGTCCATTTGGTAACTGTGGTGCTTAATGAAAAATTGCATTTAACCAAGTAATAATGGATTGATGATCATTATAGCAGACACTCAGTACTGGCGCATCAGTTGCATCTCCCATCCAGTATCAGAAGCCTTGTACCTACTTAAGTTTCTTCTTGCATCAGTGCCATTCAAGTTGGTGGCTGTAGCCCGAAGGATGTTACAATTGCAATTtgcacaatataaatgtatttatatgtatatggaGAGTAAGAAGCCTTATGAACAAAATCATGGAACAAACTATCCCTTAAACCTTGTGAACCACCTATCACTACAAGTGTACATTCTCCCATTTTTCACAAACTCTTTCAAAAACCAGAGCGTGGTATTTATATAGTCTAAATAAGAGGGGGGGGTTActgcattttatattgattaatgAAATGGAGACAGGATTACTTAATTGTCTGGGTTCTATGTTTTGTACAGAAACCAAAGCTCACAAGTGGTGGCTGcggtcatttttgttttttatggaaaatgtttataattgtatttttttgacCTGTATGATTATTACAATctgtattttcaataataaaaaaaaatatttactttttttaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87308 lncRNA downstream 1263 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 1263 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 1263 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 117053 12970253 ~ 12970555 (-) True G69849
TU87141 lncRNA downstream 1207152 11879097 ~ 11880456 (-) True G69759
TU87397 lncRNA upstream 205588 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 208090 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 526779 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 598421 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 662890 13759226 ~ 13761420 (-) True G70091
AMCG00014398 mRNA downstream 105113 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014397 mRNA downstream 212072 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014396 mRNA downstream 306770 12778483 ~ 12780838 (-) True AMCG00014396
AMCG00014395 mRNA downstream 347943 12729727 ~ 12739665 (-) True AMCG00014395
AMCG00014389 mRNA downstream 360964 12721742 ~ 12726644 (-) True AMCG00014389
AMCG00014411 mRNA upstream 78875 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014408 mRNA upstream 112409 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014413 mRNA upstream 145490 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014410 mRNA upstream 155599 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014409 mRNA upstream 166043 13262379 ~ 13265549 (-) True AMCG00014409
TU87063 other downstream 1425115 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2289461 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3770441 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4703384 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 4929018 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15233403 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16292954 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19166831 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19501126 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19501126 32597462 ~ 32619149 (-) False G73127

Expression Profile