RNA id: AMCG00014413


Basic Information

Item Value
RNA id AMCG00014413
length 450
RNA type mRNA
GC content 0.45
exon number 3
gene id AMCG00014413
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13241826 ~ 13242652 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCTTGTTTCTGCCCAAGCTGTCCTGTAAAAAGGACATTGACGAAGTAATTAAGAGCGTCGCTGAGAAAGTGTTGGTGTTGCGCTTTGGGAGAGATGAAGATTTGAACTGTCTGCAATTGGATGAGATCCTATCCAAAACATGCCATGACCTCAGCAACATGGCATCCATTTACCTGGTGGATGTTGACAAGGCGCCTGTCTATACCAGATACTTCGACATCAGCTACATCCCCTCCACTGTATTCTTCTTCAATGGGCAGCACATGAAGGTGGACTATGGGTCTCCAGATCACACCAAATTTGTGGGAAGTTTTAAAACTAAGCAGGACTTCATTGACCTAATTGAGGTGATTTATCGGGGGGCGATGAGAGGAAAGCTGATTGTGCGAAGCCCCATTGACCCAAGAAATGTTCCTAAATATGACCTCCTCTACCATGGAATATAA

Function

GO:

id name namespace
GO:0005681 spliceosomal complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87328 lncRNA downstream 145490 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 155481 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 155481 13085363 ~ 13086345 (-) False G69896
TU87311 lncRNA downstream 155481 13085363 ~ 13086345 (-) False G69896
TU87239 lncRNA downstream 271271 12970253 ~ 12970555 (-) True G69849
TU87397 lncRNA upstream 59272 13301924 ~ 13302379 (-) True G69950
TU87421 lncRNA upstream 61774 13304426 ~ 13375879 (-) True G69973
TU87498 lncRNA upstream 380463 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 452105 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 516574 13759226 ~ 13761420 (-) True G70091
AMCG00014408 mRNA downstream 4298 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014411 mRNA downstream 38019 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014412 mRNA downstream 108075 13087662 ~ 13133751 (-) True AMCG00014412
AMCG00014398 mRNA downstream 259331 12907404 ~ 12982495 (-) True AMCG00014398
AMCG00014397 mRNA downstream 366290 12850007 ~ 12875536 (-) True AMCG00014397
AMCG00014410 mRNA upstream 9283 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014409 mRNA upstream 19727 13262379 ~ 13265549 (-) True AMCG00014409
AMCG00014437 mRNA upstream 135010 13377662 ~ 13408576 (-) True AMCG00014437
AMCG00014434 mRNA upstream 200618 13443270 ~ 13473171 (-) True AMCG00014434
AMCG00014432 mRNA upstream 235696 13478348 ~ 13487613 (-) True AMCG00014432
TU87063 other downstream 1579333 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2443679 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 3924659 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4857602 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5083236 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 15087087 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 16146638 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 19020515 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19354810 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19354810 32597462 ~ 32619149 (-) False G73127

Expression Profile