RNA id: AMCG00014414


Basic Information

Item Value
RNA id AMCG00014414
length 3920
RNA type mRNA
GC content 0.48
exon number 11
gene id AMCG00014414
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13266017 ~ 13274303 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCCTAAGGggtaatatacatatatattcatacattagAACGGTATATAATCCCGTAGTTATATGGAAAATATTGTTTAGTTAACCATAAATAGAAGCAGTCACAAATGGGAGTATCAAGTCTACAATTAGGCGAATATGGCCCAGTGGTGGACCTCTCTTCCCAGGGAATCCAGAAGCTGGAGCCCTCTCTCCCCTGCCCTCCTGGGTCTCACACTCTGATCCTGGATGGGAACCACATCATAAAGCTGGAGCACCTGGAGAAGTGCAAAGAGCTTTTGCAGTTGTCCGTTGCCAATAACCGCCTTGTTCGCATGATGGGAGTATCCAGACTGGTAGACCTCAGAGTACTGAATTTACCCAACAACAGTATTGGCTACATAGAGGGGCTAAAGGATCTGGTACACTTGGAGTGGCTGAATCTGGCTGGCAACAACATCAAGGTCATTGAGCAGCTTAACAGCTGTATGGCTCTTAAACATCTGGATTTGTCTGACAATAATATCTCTCAGATTGGAGACCTCTCAAAACTTTCATCTTTGAAGACTCTGCTCCTGCATGGGAACATCATCACTACACTGCGCAGTGTTCCTGCCCACCTGCCTCCAGAGCTCACCATCCTGTCCCTGGCAGAGAATGAAATCCGAGACCTGAATGAGGTGTCTTACCTGGCTGCCCTCCCTGAACTGGAGCAGCTGTCCATCATGAGTAACCCCTGTGTCATGGCCACCCCTTCTCTGCCTGGCTACGATTATCGCCCCTACGTAGTCAGCTGGTGTCTCTGCCTTAAGATTCTGGATGGCTATGTGGTGTCACAGAAGGAAGGTTTAAAAGCAGAATGGCTCTACAGTCAAGGTAAAGGGCGCTCATACCGCCCTGGACATCACATCCAGCTGGTTCAGTACCTGGCGTCTGTCTGTCCTCTCACCTCCACCCCAGCCCTGCAGTCTGCAGAGGATACCAAGCTAGAGAAAATCCTGAACAAGCAAAGGCTTCATCAGAAACAGCTGCTTCAGCAGTCCCAAAAAGGAAGTCCCCCGATCTCCTCCACACCCAGCAGGCCCACTCAGCTTGTGCTGGAGCAGCGCAGCCCTACCCAGTCTCCAAGGGCATCTCTAGAAAGAGAGCCAGCAGCCCCACAGATTAACACCTGGTTGGGCCTCAGTATCTCCTCTGACCATTGCTACGCTGCCGATCCGGCTTCCCGCCTGCCCGCCCCCCGCAGTGAACCGCTCTTCCTGGAGGACATGCAGACGGACGAGGATAAGCTCAGCTGCAGCCTGCTGTCCTCAGAGTCCACATTCATGCCCGTCGCCTCTGGCTTGTTCCCACCATCCCCCAGTCACCAGCTCACACTGGACatcgaggaagaggaggagcaggaCTGTGGGACGGCCATCCTGCACCTCACAGACTGCATAGCCGACCAagagcaggagggagagggCGAAGGGCAGGAGAAGAGCACAAAGCAGGATGTCTTTACTCCAGGCATCTCTGATTCACACGTGAGCAGCGTGGACTTCCCAGCAGGCATTAGCAGCTATGTGCAGATGGGCAGCCAGCATTTAAATGGCGCACTGGCCTTCGAGGACTGTTCGGTCTGCACTGTTGTGGAcagggagcagcagcaggaagcCTTGGTCCACACTAATGACAAGAGGTGTCCCAGCTCGGATGAAGCCGCCATAATAATCCAGGCATGGTGGCGGGGATGCTGGACCAGGCGTTTCCACCCCAGGGCAAAGGAAGTCCGCTCAGAAATCCGTCTCCGCAGAATGCAGGAGCACATAGTATTTCTGTCCACCGAGCTGGACCGGGTGAGAAAGgagcaggaagaggagagaaTACAGAGGCTTGTACAAGAAGATGCTGTGAAATTTCTGTGGCAGCAGCTCCAGTCCATGCAGCTCTGGCAGCAGTCTGTCAACCAGCAGCTCCAATCCCTTCCCCATCGAGCTGTCCCTGTGTCCAGCTCTGTGATTGGCCTGTCTTCCTCCTGTCTGTACGAGCTTCCACCACCGCACTCCTTAGCTCCGGACTTCAATGGCATGGCGGCGCCCTGCTGCGATCACTCCTTCCCCGACTCGGGCTTCCACTCCTCGGGCGAACCCCAGGGAACTCTGACTACCTGTCACAGTGCCACGGATGACAGCCTGAGCTCGGCCACCGGAGACTCCCTAGAGACAGTCCGGCCCTTGTCTGAGGGAATGAAAGAAGGCAGCGTTTTGAGTCCCGGGACAGGCAGCCAGGACAGCTCTCGCAGCGAGCAGGACAGCAGCCTCCTGCAGCAGTACCTCACCTCAGTCCAGCAGCTGGAGGAGGCTGAGGAGGGGGCTGGGGAGAGGACGGGGAGCTTTATTCAGTGCGAGTCCCCGGGCTCCCCACTACTGCAGGCTTCAGAAAAGACCCCCCCTGCCTCTGAGACAGACCATGCCCCAGTCTTTGAGAGAAATAAAGCGCCTGAGAGGCAGGCCATGCTCCTGTGAGCAGAACTGtgatcagagagagagcagggaagGGGCAGCGGTGGAGGAAAGCATTGTACTCCACTTCCTCTCACTGCAAGCGTGCTGTACCCTAGAAGAGGCAGGACATTCACCAGAGACTTGAAGTTTGTTACGTTGACACACTAACGTATCAGCATGTGAACTGCTGTACTCACCTCATGGATTTCTGAGAAGCTTTTTGAGATCCTCAATTCTGAACAAAGTCAAACATCACAAATCAAAACCGTTAGTCTTTTGCCTTTGAACATTTATGAGTAATACATCTGTAATTTTGACCTGTTTGCCTATAATCATACAAATTATGTATTGAAACTTTAATGAATGCAGTATTTATAGCAatgatatattaatattatccCAGATCAGCCTCCCTTATACCTTGACAAACAGGATATGCCATTTCAGTACCGTGATAAAGGTTTTGTGCTGCACAAGGGGAAGGATAATTTCCCTGGAGTGATTCTCTGTTGAGTCTGATTTCAGACCAAAGCTTGTAAATTAATATGAGGTTTTCAACATCTCTAAATGTAGCccaaatatgatttattatcaTAGTGAGGCTGCGTTATTTTgaagaattaaaatgcatgtcgTTTATTATGCCTTATTTCCATCCCGCTGTCAGGTAAGGTCAGTCTTTGGGTTCCTTTGCGTCCAGATCTCCAAGAGGAAGTCTACcgttacatttcagaaaaaaattaacACTCCCCTTGGAAATCCAACATTAAGAAAATGgaatattgtgatattttctGGACATAATTGTAATCCAAGAATGCAGTTTTGCATTAGGGACTCTTCTAATGCTGATCATTCCCCAGAATGGTAGGATGACaaagctttttgttgttgtagttcttttttatttattattttgtgcaaaCTACAGGTATATACTGCTCACCAGTCGATAATGCTCTGTGTAATGTAAGTAATCAATGGCTCATTGCATTTTCTGCTGCAGTAACTGTCATAGTCAGTCTTGCATAGACCAGTCATGTAAATACTTTCAGCAGTAGGAAAGTGTAGGGCCATTGAAGTGGAGATGATGTCATCCATTATCGGCAAATGATATGCAGTGAAGTCAAATGACACTTTGATTAAAGAAGTATACGATATACATGTGGACTTTCTGTGGCAATTTATATGTTTTCATAACTCCTATATAGACAAATGTGCACTTATTCTGGTTGATTTCCCCCAAAATTTTCAATCTCTACTATTTGTCAAGAATTCATATATTAAAGTCAAGTACAAACTGTGCACTTTCTGTTACCGATATCCTTGGTCTAAACTACAAAGACATATTCTAGTTGTCTGCTTATGGACAAGAAGGTTCTTCTGTGAATAACCACTCATTGTTTGATACGTTGCTTAAAAGTTAGTGTGCATGTTCTGATGAGTTATCCTGA

Function

GO: NA

KEGG:

id description
K16717 CEP97; centrosomal protein CEP97

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87357 lncRNA upstream 14285 13246309 ~ 13251732 (+) True AMCG00014407
TU87358 lncRNA upstream 14285 13246309 ~ 13251732 (+) False AMCG00014407
TU87223 lncRNA upstream 283583 12980259 ~ 12982434 (+) True G69833
TU87160 lncRNA upstream 665704 12600104 ~ 12600313 (+) True G69778
TU87118 lncRNA upstream 1481934 11783865 ~ 11784083 (+) True G69739
TU87406 lncRNA downstream 59911 13334214 ~ 13335185 (+) True G69959
TU87408 lncRNA downstream 78030 13352333 ~ 13379593 (+) False G69961
TU87409 lncRNA downstream 103231 13377534 ~ 13380404 (+) True G69961
TU87516 lncRNA downstream 408740 13683043 ~ 13684492 (+) False AMCG00014423
TU87518 lncRNA downstream 420512 13694815 ~ 13696871 (+) True G70054
AMCG00014407 mRNA upstream 15737 13246350 ~ 13250280 (+) False AMCG00014407
AMCG00014405 mRNA upstream 20383 13240840 ~ 13245634 (+) True AMCG00014405
AMCG00014406 mRNA upstream 25907 13239073 ~ 13240110 (+) True AMCG00014406
AMCG00014401 mRNA upstream 200040 13057865 ~ 13065977 (+) True AMCG00014401
AMCG00014400 mRNA upstream 225073 13029886 ~ 13040944 (+) True AMCG00014400
AMCG00014417 mRNA downstream 2270 13276573 ~ 13284294 (+) True AMCG00014417
AMCG00014416 mRNA downstream 17026 13291329 ~ 13301873 (+) True AMCG00014416
AMCG00014415 mRNA downstream 49064 13323367 ~ 13331090 (+) True AMCG00014415
AMCG00014419 mRNA downstream 65884 13340187 ~ 13360020 (+) True AMCG00014419
AMCG00014418 mRNA downstream 87445 13361748 ~ 13371376 (+) True AMCG00014418
TU86705 other upstream 3257369 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 5849423 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 5916550 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 8614053 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 1062555 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 2401328 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 2401328 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 2855222 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 3191378 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile