RNA id: AMCG00014433


Basic Information

Item Value
RNA id AMCG00014433
length 4378
RNA type mRNA
GC content 0.40
exon number 8
gene id AMCG00014433
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13866643 ~ 13882123 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGCTCTGACACTGCAGCGCACTCCCCGGAGGCTGGTGCGCAGGCGCACGGCGAGCCACTGGCAATCAAGTTGGTCAAACAGCTGGTGATAAAATGTTGGGAGAGAAGAGCTGACCGTCCGCACACACCCGGGAACTGGGTCGCGAATAACTGCGCTGGCGGAGCCCGGATAcatAAGCTCAAATCATCACAGAAGGATAAGGTTCGCCAGTTTATGGCATTTACTCAAGCTGGAGAGAAGACCGCTGTGTACTGCTTGACGCAGAATGACTGGAAATTAGAAGTGGCAACGGACAACTACTTCCAGAATCCAGATCTCTACTACAAGGAATCCATGAAAAACTCAGTAGACCGAAAGAAATTAGAACAGCTTTATAACCGATATAAAGGCAAGTATCCTCAGGATGAAAATAAGATTGGTATCGATGGCATCCAGCAGTTCTGTGACGATTTGAACCTGGATCCTGCCAGCATCAGTGTGTTGGTGGTAGCATGGAAGTTCAGAGCTGCCACTCAGTGTGAATTCAGCAAGAAGGAGTTTGTGGACGGCATGTCTGAGCTAGGCTGTGACAGTCCAGATAAACTCAAAGCACTCCTCCCACGATTAGAGCAAGAATTAAAGGACCCCGGAAAGTTCAAAGACTTCTATCAATTCACGTTTAATTTTGCTAAAAACCCTGGACAAAAGGGCTTAGATTTAGAAATGGCTGTGGCCTACTGGAATTTAGTTTTGACCGGAAGGTTTAAATTTCTAGACCTCTGGAATAGGTTTTTATTGGAACATCACAAGAGATCAATTCCAAAAGACACGTGGAATCTTCTTTTGGATTTCGGGAACATGATTGCAGATGACATGTCCAATTACGACGAGGAAGgtGCTTGGCCTGTTCTTATAGATGACTTTGTGGAATTTGCGCGTCCAATCGTCACAGGAGGCAAGCGCAAAACTGTATAATTAACTGGCTCTAGGGTGGGCTTttatccttttattttgttgtcgttttttttttataaagacaaaaaaaaaaaaaaacacttgatgTCACGCAGTGTGCGCGCTGCTGAGGGTAGGGGTTGAAGAAAACCAGCTGGGGAGAATAGGGAAGCGGGTTTGAACAGGAACAGCCACGCACACACGCTGCTGCTGGGGTGACCGGCCACGCCACAGGGTGGCCGCACCCTCCCAGAGACCTGGCTTCACTTCTCGCTGCTTTCACGGGATGTCGCTATGAAGGCTGGCACGCAGACTCTGCCCACATGTGGTGGCTCAGAAGATAGCTCTTGCTTTatgtaagaaaagaaaaaaaaaaaaaactttcttcaGATATTGCAATGGTTGTATGATATAGGATGTAGAttctgcatgtctttttttttttttatacttcgAAACAATGTAAACTACAGATCCATTTTCTTACTCAGAGAGATGTTCGGACAGCACAGCATGCCATTGAGTTCATGACAGGTGAACACCAGCAGACACTATTATTACAGTTGTAAAATACTGTATCTATAACTATCtatatagataaatatgtatatagagagagagagagagagagagaactaaatacaaataagaagaAAAGTGAAGTGTGTGGTGTACATTAAAGACTTGGTTCTAAAGTATCAtacatttggtttatttttaaatgccagaCAATGAAGTAGACAAAGTGGAATGGAAACTTTGCAAACATAATAAGCAGGAATTTACGTTATACTAGTACAAACCAAAGGAAGGCTGCATTTCTAAAGTGATCCAGTAATTTGGTCGTGACTGGATTACCTGTCGTTAACCAGATTCCATATTGTTTACAGCTATACACGTATAGAAGCCTGAAtactttaaaatgctgttttgctGTCTCTTCATTATCATGTATAGCAAAACTCAGGTAAAGctgtcactttattttaatgctcCTTGTTCttctaaaattatttaatttgtctgaaTTGTGGAAGGGGTAGCTGCTGGATCTTCACCAGTACGTAGAAGTGGACAGAACTCTGTCATCTGTTCTTCttcctttcaaatgtaaatgattaattcatgtattttggtgtttattttgttttgttatatgaatacaaaacagGACATTGCATAACAAGATAATAGTTCATggattatttgaaatatatatctaaAGAAAACAGCCAGTTCTCAGCCTCAataatatattcagaaatattaaaaataatcacaagCCTGAAAGTGGGCAAGTCTTCCTCATTTTGGTTATCAATGACGAAGACCTGAATTTCTATTTGCAGCTTTACCCCACAATATTAATCCACTGCAGGGTTCAGCAAAGGCATCCAACCTCTCTACTACGAGAAGGCACGCAGAATACAGACTAAGACTAAGAGGACCACAGCAGATAACACACAGTCCAGCAAGGTATTTTAGTTCTATTTGTCAGATTCATCACATCTAAGTCTAATTGAAACTCTTATTGAGCTCTCTTCTGGCTGGTTTTACAGACTCTGATGAGCACtagctcattttattttaggtagatTAGTACTAGAATAGTGCTGATCGAGGTCTGTGAAACGCAGCATTTGTGTTTCTCCACTTGATGTGCTCTATGGTGTTTTTCTTAATCGCCCAGTGCTGCCCAGGCTTGTGttgttgtgcagtgcagtagaatagtgagATGGCATTGTGGTGCCACTGTTTGGGATACAACTGAACTCGTTCGCCTTTCCTAAAATATTGATTCTATTGTTTGGCTTGCATTAGTAGTATTActgatgttttaaattaattcagacaTAGAGATTCTTGTGTCCAGCAGGTGTTGAGGGTGACTTCTGTTCATGACGTGTTCATTGTTTTAGTCCCAATTTCACTTGGCAGTTTAGACATCCACAGGAACAGCAGTTAGACTGTAAGCCTGTACCCATGAGGTGTGATGCAGGAAAGCACACTGAAGAAAGAAATCATGGGTTATAGGTGATTCATTTTGCCACTGAAAtaatcctggaaaaaaaaaaagtcacataaACTGCTGTTCACCCCAGgtgttgttaatacaaattTGTTAAACTGTGAAGTAAATATGACCAGTTGATGTGTTTCCATCATGTAATCTAAAGATATagctttattataatataaagcTTTTACAGTAGATGTAAAATTATCCCATTCATTTAAAACACGGATTTAAAACttgctacattttaaaactgtgaaCATGTTCGATACATGCAAGGACTATTTActtaagtttatatatatatatattgtattaaaaactgGAGCAGATCATTTCCGCCCAGACCTTCTGCAGATGTGTGTCTCGGAGCGAATGCGGTCCTCTGAGCGTGGCAGTGGCACCCTTCCTCTCTACATTTTCCTGCCTCCTTCACTCATTAGTTGAATCCATTCATGAATGAAGCCATGATTACTAACACTGTGGCTGCCAGGTGCTTTCCCACTCTGAAAGTGAAGTCTTTTTTTGCATTGAAAATCCCTGTTGTCCAGAGCTGATATAACTGCCTTGGGGAAGTTCCCTGACCCTTGAGCTGTGCTTTCGCCTCTCGGGCTCACTTCTAAATGAACTTGGCTGATCTATTCTGTTGATAGATAATTActtatatattgcttttctCAAGTGGCTGCATATCAGAGAAGAATGCCTCCCCAAAATGAACAATCTGTACCACTAGATGTCATGAAAGTAGACGTCTTAGCCTGGGACAAGCTTTGTGCTGCATCTTGATTTCACTGGTAGCATATCAAGCACAACACCAAGGAGAATATTATCATTAAACATGAGGGACAATTTCCACTTTATGATGAACTAAACACAATCTAGACGAGCGCTTTTTTTGACCCGAACTGTCTTGCCATTTTGCTGTGCATACTTGTCAACTAACAGTTCCTGACAGATATCGGTACTTACTTAACTTATTGCTGCATTACATAACTGTTTCAATACGTGAAACTTGAGCACTTCCATTGTCACAaggtattattaattataccTCAGTTTAGAATACATAATTACACTTGTTTACACTTAGATTATTTTAACTATTCAAAACAAGAACACAGCATTGATGCCTAGCTTTTGGAATTGCCCTTTTTTCCAAACCCACGTTGCCTAGCGAAGTTGAATTGTGGTTTTGGTGTATGATGTGTATAAAGGCCTGGATTACTGCAATGTAACATGTATAAAGTGCCCTGAATGAAGTTACTGCTGACAGTGTGTACTGAATCAAGTGCAGCCTAAAATCAGTATTATTGCTTTTGTAAATACAACTAAAGATTGTTTAAATTGCTGGTGtttaaatgaggaaaaaaaagaataagaaaacaactttattttatttttcattgttattttaaaaaggaa

Function

GO: NA

KEGG:

id description
K17822 DCUN1D1_2; DCN1-like protein 1/2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87572 lncRNA downstream 94371 13770177 ~ 13772272 (-) True G70094
TU87569 lncRNA downstream 105223 13759226 ~ 13761420 (-) True G70091
TU87527 lncRNA downstream 169672 13694757 ~ 13696971 (-) True G70063
TU87498 lncRNA downstream 243262 13623115 ~ 13623381 (-) True G70034
TU87421 lncRNA downstream 490764 13304426 ~ 13375879 (-) True G69973
TU87667 lncRNA upstream 37398 13919521 ~ 13921330 (-) True G70169
TU87744 lncRNA upstream 217241 14099364 ~ 14102156 (-) True G70238
TU87845 lncRNA upstream 1163729 15045852 ~ 15059774 (-) True G70315
TU87890 lncRNA upstream 1356680 15238803 ~ 15242333 (-) True G70346
TU87964 lncRNA upstream 1492115 15374238 ~ 15376774 (-) True G70402
AMCG00014431 mRNA downstream 1793 13853162 ~ 13864850 (-) True AMCG00014431
AMCG00014435 mRNA downstream 20158 13828455 ~ 13846485 (-) True AMCG00014435
AMCG00014436 mRNA downstream 76508 13784915 ~ 13790135 (-) True AMCG00014436
AMCG00014428 mRNA downstream 123824 13728703 ~ 13742819 (-) True AMCG00014428
AMCG00014429 mRNA downstream 157356 13697335 ~ 13709287 (-) True AMCG00014429
AMCG00014450 mRNA upstream 41476 13923599 ~ 13929423 (-) True AMCG00014450
AMCG00014452 mRNA upstream 83494 13965617 ~ 14002734 (-) True AMCG00014452
AMCG00014451 mRNA upstream 123068 14005191 ~ 14041867 (-) True AMCG00014451
AMCG00014455 mRNA upstream 225172 14107295 ~ 14108479 (-) True AMCG00014455
AMCG00014453 mRNA upstream 237723 14119846 ~ 14137980 (-) True AMCG00014453
TU87063 other downstream 2204150 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 3068496 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 4549476 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 5482419 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5708053 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14447616 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 15507167 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18381044 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 18715339 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 18715339 32597462 ~ 32619149 (-) False G73127

Expression Profile