RNA id: AMCG00014437


Basic Information

Item Value
RNA id AMCG00014437
length 3263
RNA type mRNA
GC content 0.46
exon number 13
gene id AMCG00014437
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 13377662 ~ 13408576 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCATGGCCTTCACCCTGGAAGAGAGGATGCAGCTGGGTATCCATGGCCTGCTACCCCCCTGCTTCCTCACCCAGGACGTGCAGGTCCTCCGTGTCATGAAGAGCTACGAGACCAGGAGCAACCCCCTAGACAAGTACATTCTGCTGATGACCCTGCAGGACAGAAATGAGAAGCTGTTCTACCGCCTGCTGACCTCTGACATTGAGGAGTTTATGCCCATTGTTTACACCCCCACTGTGGGGCTGGCCTGCCAGCAATACGGCCTGGCATTTCGAAGACCACGAGGGCTTTTTATCACCATTCATGACAAAGGCCACATTGCAACAATGCTGGACTCTTGGCCAGAGGAGGACATCAAGGCCATTGTGGTGACTGACGGAGAGCGGATCCTGGGCCTGGGAGACTTGGGTAGCTATGGCATGGGGATTCCTGTGGGGAAACTGGCCCTGTATACAGCCTGCGGGGGAGTGCCGCCTCAGCAGTGCCTGCCAGTGCTTCTGGACGTGGGCACGGACAACCAGAGTCTCTTGGATGACCCTCTGTATATTGGACTGAAGCACAAGAGAGTCAGAGGGAAGGAGTATGATGATCTGATTGATGAGTTCATGCAGGCCGTGACAGACAAATATGGAATGAACTGCTTAATCCAGTTTGAGGACTTTGCCAATTCCAATGCATTCCGCATCCTGAACAAGTACCGGAACAGATACTGCACCTTCAATGATGACATTCAAGGCACCGCCTCCGTCGCCGTGGCTGGCCTCCTCGCTGCCCTGAGGATCACCAAGAACCAGCTCTCCGAACACAAGTTTGTCTTCCAGGGAGCCGGAGAGGCTGCCATGGGCATTGCCCACTTGATCATTATGGCCATGGCTAAGCAAGGCATCCCCCACTCCGAAGCTGTGAAGAAGATCTGGATGGTTGACTCCAAGGGGCTCATTGTCAAGGGCCGGGGACACCTGAACCACGAGAAGGAGCAGTTCGCCCAGGATCACCCGCAGGTCAGGACCCTGGAGGAGGTGGTGCAGATCGTCAAGCCCACGGCCATCATAGGTGTTGCTGCCATTAATGGAGCCTTCACAGAGAAGATTATAAAGGACATGGCCTCCTTCAACGAGAAGCCCATCATTTTTGCCCTGAGTAACCCCACCAGTAAGGCGGAGTGTACAGCTGAGCAGTGCTACCGGCTCACAGAGGGTCGTGGCATCTTTGCCAGTGGCAGTCCCTTCGATAAAGTCACGCTGCCTGATGGACGCACATTCATCCCAGGCCAAGGCAACAATGCCTATGTGTTCCCAGGGGTGGCTCTGGGGGTGATAGCCTGTGGCGTACGCCATATCTCTGATGACATCTTCCTCACCACCGCAGAGGCCATCGCTGAGATGGTGACAGAGGAGAACCTGGCTGAAGGGCGACTGTACCCTCCTCTCAGCACCATCAGGGAGGTTTCCTTCAAAATCGCTGTCAAGATTGTGGACTATGCCTATAAGAAGGACATTGCTTCGTGGTACCCTGAGCCTAAAGACAAAGAGGCCTTCATCCGCTCTCACATCTACAGCCCTGACTACGACTCCTTCTCCCTGGATTGCTACTCCTGGCCGAAGGAGGCCATGGAGGTTCAGGATGTGTAAAACAGCTGCACATAGCCAAGCTCTcctattacatatatatatatctgacaCTGCTGACATATCGACGCAATGCTGACTCGTGCATCTTTAAACTGCTGCATTAGAAGCAGAACAATCAAAATCACCTTTCATCAGGGGGTGATAAAAATACTACTTTGCATTTAAGacaatgttaaaacatttaaatctactttttattttataaatgcaaacTCTTAATGCCACACTGACTGAGGGTGACAAGTTATAACTCCTGAAACAGACTTAATACTCTGCTTTTGCTGGCCAAAAACGTCTCCCCTCAGAAAACAACTAAAGCCTTGTCACCAATTCCACTTGCATGAAGCCTCGAGTCTTCTGCCACCACAGTACGCATCCCAGACTCTCCTGCTAGTACCTCTTTAATGATGATGTGTTCCTACGCATAAAGTTTGGTTTGCAGAGTCTTTCTCAGGCTGTAATTAATGAAGGCCTTCAAAATCCAAGACTATTCCTGGcttcatattttacagttaGTCTAACACTTATCCCTGAGTCTGAGGAGTCTTTTGGGTATTAATGTAGTACTGCAACACtcacatacaaaatattgattacTATTGGTTTTGAGATGCCATAGTTCCCCAATACCCTTTTCAATagaactaatatatatatatatatatatatattaggtgtaggttttgacattttaaattggcaacctttttaaatcattgaaCATGAATATTTCTATTTTAGAACAGTTTCTACTGGGAATGGTTATTTGTAAGTGGCAGGCATAATTGTTGGTATATTATTGCCTACCATACACTGTGTACTGCACTATATAAATGAAGCATGTACCAAATATATTAATCTCATGAATGAAGTCATGAATACTGTGTGGTTAATCATGTTTAAACATGGATTGTCTCTTGGGTCTCGTCTGCCAAAGTAATGTAAAACTTTAATGGTGCGATTTGGACATGTTGTGGCCTGTGCAGCTGAAGTGACACTAATTTTAACATCTACTTTTTATGAAGAATAATTTTACAGTAGGTTTACATATCATTTTCCAGCTGCCAATGGGATGTTCAAATGAAGTGGAATATGTTATCCCAATTGTGttgaaattgatttgtttaattcagaaACCGATAAGCATTGACGGCAGAGTCATTGTTAATTACAATAGTTTATTGGCATTCTATTGCTTCCCATCAGTTCACGGTATTTCGTTATTTTCATTAGTACGTACAAAGGCTCTTAAGCGCACAATCCAGAACAGTTATATTGAATGTTAAggtgttattttgtttcagaaagctgaaggtattgttttttccccaccattAGTTGGCATGCTGTATATCAACTACCACTGACACCTTTGCTGCAGTCCAATCCACTCTCAGGGACTTCAACCAACACATCTGCCCTGTTCTCTCCATTTGGATCGTATGTTCAGTACAGCATTTCAAATGTCCGATAAACCAGAGATGAATATATTCCTACACTGTACAAACAACAGTATGAGGAAAACAGCAGTGATGTTCTTTCAAAAAGCAATTTCAATAAATGTcctttgtaaattgtttttgttgttgtattcaTTTGGATGACAGCATATAAGTGAGGAGTGAACCCCG

Function

GO:

id name namespace
GO:0006108 malate metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity molecular_function
GO:0046872 metal ion binding molecular_function
GO:0051287 NAD binding molecular_function

KEGG:

id description
K00029 E1.1.1.40, maeB; malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87421 lncRNA downstream 1783 13304426 ~ 13375879 (-) True G69973
TU87397 lncRNA downstream 75283 13301924 ~ 13302379 (-) True G69950
TU87328 lncRNA downstream 281326 13087608 ~ 13096336 (-) False AMCG00014412
TU87308 lncRNA downstream 291317 13085363 ~ 13086345 (-) True G69896
TU87309 lncRNA downstream 291317 13085363 ~ 13086345 (-) False G69896
TU87498 lncRNA upstream 214539 13623115 ~ 13623381 (-) True G70034
TU87527 lncRNA upstream 286181 13694757 ~ 13696971 (-) True G70063
TU87569 lncRNA upstream 350650 13759226 ~ 13761420 (-) True G70091
TU87572 lncRNA upstream 361601 13770177 ~ 13772272 (-) True G70094
TU87667 lncRNA upstream 510945 13919521 ~ 13921330 (-) True G70169
AMCG00014409 mRNA downstream 112113 13262379 ~ 13265549 (-) True AMCG00014409
AMCG00014410 mRNA downstream 116673 13251935 ~ 13260989 (-) True AMCG00014410
AMCG00014413 mRNA downstream 135010 13241826 ~ 13242652 (-) True AMCG00014413
AMCG00014408 mRNA downstream 140134 13208745 ~ 13237528 (-) True AMCG00014408
AMCG00014411 mRNA downstream 173855 13175211 ~ 13203807 (-) True AMCG00014411
AMCG00014434 mRNA upstream 34694 13443270 ~ 13473171 (-) True AMCG00014434
AMCG00014432 mRNA upstream 69772 13478348 ~ 13487613 (-) True AMCG00014432
AMCG00014438 mRNA upstream 90150 13498726 ~ 13527602 (-) True AMCG00014438
AMCG00014430 mRNA upstream 122619 13531195 ~ 13536369 (-) True AMCG00014430
AMCG00014429 mRNA upstream 288759 13697335 ~ 13709287 (-) True AMCG00014429
TU87063 other downstream 1715169 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 2579515 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 4060495 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 4993438 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 5219072 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 14921163 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 15980714 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 18854591 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 19188886 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 19188886 32597462 ~ 32619149 (-) False G73127

Expression Profile