RNA id: AMCG00014445


Basic Information

Item Value
RNA id AMCG00014445
length 2497
RNA type mRNA
GC content 0.47
exon number 7
gene id AMCG00014445
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14151299 ~ 14157726 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACAGCGCACGCCCCTTGTGTTGCGCACTGCCTTCTGGGATTGTAGTTCAAGTGTTCAGCACAACTATCTTGCGAAATGGAAAAGGGGGCTCTAAAGACACAGTTTCCCAAGATGCTTTGCAGTTTAACACTTCAGGTGGGATAGCTACGCTGCAAGCAGAGAGCCGGGGCGTTACAGGGAGACTCCTCGCCGTGTGcgctgtgtctgttttgtaagTTGTGATCTGTGTTCACGTTTTTAAAGGCACTTGAGATGTCTGTCATACTTTTGCTTGGGGTGAGCAGGACCGGTCGCGCCTCGGCCAGACATGTATTGCCTTGTTGGGGAAGAAGGGCTTTGAATGCAAACGTCAGTCGGGCTCTTTTGAACGAAACAAGGTTAGTTTCGCCGAGTGGCAGTCCGTCTGGTACAAACTCAACTGTGAGGTTCATGCACCCCGTCGCCGGAGACAAGACCGCGGCAGGGGGTCGCTACCGGAGGCGCCTGCTTGTAGGTGCGTGTGCCGCGGCGGTAGCGGGGCTTTTCGCCGGGCTCAGTCACTTTCAGCGGGCTGAGATGAAGTCCAGACCCGATTCAGATGACGGGGGAGATGACATCCTGCAGAAGTGCAAAAGTTTCATGTCCGCCCCAGTGACAGACGTCAGGGTCTTGCAGAAGAATAAGGAGGCGATGAGCACGAAGATGGAGCTGCTGATCATGGAAACGCAGGCGGAGTTCTGCAGGGCGCTGGCTGAGGTGGACGGGGGCACTTTCCAGGTGGACCGATGGGACAGAAAGGAAGGTGGTGGTGGCGTGAGCTGTGTGATGCAGGACAGCAAGGTGTTCGAGAAGGCCGGGGTCAATGTGTCCGTCGTGTTCGGACACCTCACAGAGGAAGCGGCCAAGCAGATGACGAGCCGGGGCAAGAAGCTCAAAGGAAAAGATGGAAAGCTGCCATTCTGTGCCATGGGAGTCAGCTCGGTGATCCATCCCAAGAACCCCCACATTCCCACCGTACACTTCAACTACAGATACTTTGAAATAGAAGAGGCTGACGGCTCCAAGCAGTGGTGGTTTGGAGGGGGCACTGACCTGACCCCTGTATACATAGACAAGGCAGACGCTGCACATTTTCATGGTGTCCTGAAGGAGGCCTGTGATAAACATAACCCAAAGCACTACCCAGACTTCAAGAAATGGTGTGACAAATATTTCTTCATCCGGCACAGAGGAGAGACCAGGGGCATCGGGGGCATTTTTTTTGACGACCTGGTCTCTCCCTCCCAAGAGGAGGTGTTTGCCTTTGTGAAAAGCTGTGCCAAGACTGTGGTGCCCTGCTACCTGCCCATCGTGAAGAAACACCTGCACGACTCTGTCACTCCCGAGGAGAAGAGCTGGCAGCAGGTGCGGCGGGGCAGGTATGTGGAGTTTAACTTGGTCTATGATCGGGGAGTCAAGTTTGGTCTAGCAACCCCGGGGTCCAGAATAGAGAGCATCCTCATGTCTCTACCACTAACTGCCAGATGGGAGTATATGCATGAACCTGCTAAGGGCTCCAAAGAAGCAGAAATGCTCGAAGTGCTGAAGAATCCAAAGGAATGGGTTAACTGACCTAAATGATCCCATAGTGCCAGTGCACCTCAGCTTGCTGAGTGTCATTTTGTCTGGATATTTCCAAAGCAGTTTTGtcattgcattcattttgtaaGTGCATAGAGAGCATTTCCTCCAGGACAGTATGAGTACTAGAGCTGACACGGGCTAAGGAATTTGAATAGCTAAGCACTTCTTTATATTGCACTGAGTGGGGCGGTACAGGTGATTTCTTCCCATCACTAAGGTGTGGGGCAGATAGAAAACACTTGCTGTTACCATCTAAAATGTTACACAGGAATTCAATAGAATATACAATGTACACAatttgtatacaatatatgtaattaaatgggAATTTAAACTTGGATTACTATGGACAAAGCCAGATTCTTTAACTTTGATCTGCCGGCTGTTTTCaaaataggttttgttttcctgggtAAATTGagatttacttaattttaagaTTTTTCTTAAAggataaatgtatgtaaaactTTTCTATCCTCTTAGATCGCCTATGAattttgtgctttaaaacaaagtgcCAGATAATTTCCTGTTACTGTGAAATGGTGTATCGTTTTGTTGCAACTTGCAAGTGTAAACACATTCATATCATTCTTGGGGCGCCTTTTCTGgagttttgtgaaaatgtcctgatttttttaaacattattaattgaattttaattgaatagattaatgtaaataaaagatGAAGATGACTTTGGGACTTTTAACACCATTTGTGGACACTATTCTTTCCTGTAAGGAATATTATGGATTTTTCTTCCTTACAGCTGTGCAACTGCTCAGGGGCTCctggtatatttgtttttaatgaatgtggGAAATGGGTTGTGTTTTATGAAATCATTTGAGATTACATATTTGTTCATGCgtcttttttaattaagc

Function

GO: NA

KEGG:

id description
K00228 CPOX, hemF; coproporphyrinogen III oxidase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87518 lncRNA upstream 454428 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 466807 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 770895 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 771706 13352333 ~ 13379593 (+) False G69961
TU87406 lncRNA upstream 816114 13334214 ~ 13335185 (+) True G69959
TU87727 lncRNA downstream 9720 14167446 ~ 14171012 (+) True G70221
TU87766 lncRNA downstream 36053 14193779 ~ 14194433 (+) False AMCG00014456
TU87767 lncRNA downstream 40254 14197980 ~ 14199308 (+) False AMCG00014456
TU87784 lncRNA downstream 308978 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 1022119 15179845 ~ 15180820 (+) True G70286
AMCG00014443 mRNA upstream 8226 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014444 mRNA upstream 45805 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014442 mRNA upstream 186176 13944780 ~ 13965123 (+) True AMCG00014442
AMCG00014441 mRNA upstream 212194 13930882 ~ 13939105 (+) True AMCG00014441
AMCG00014440 mRNA upstream 229969 13905849 ~ 13921330 (+) True AMCG00014440
AMCG00014446 mRNA downstream 2910 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014447 mRNA downstream 4399 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014456 mRNA downstream 31838 14189564 ~ 14205014 (+) True AMCG00014456
AMCG00014458 mRNA downstream 65790 14223516 ~ 14235412 (+) True AMCG00014458
AMCG00014460 mRNA downstream 80285 14238011 ~ 14241495 (+) True AMCG00014460
TU86705 other upstream 4142651 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6734705 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6801832 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9499335 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 179132 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1517905 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1517905 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1971799 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2307955 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile