RNA id: AMCG00014456


Basic Information

Item Value
RNA id AMCG00014456
length 3231
RNA type mRNA
GC content 0.47
exon number 20
gene id AMCG00014456
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 14189564 ~ 14205014 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCATACGGATGTGTTAGGTGTAAGAATTTCTCCTCCATCTGTGGAGTTTTTTGACGTCAAAGCAGGAGACTCATACACAGCTACTGTGACAGTGAAAAACATCAGCAAGTCGGGCAAAAGAATCCGAATCCATGGACCTCAATCACAGCTCTTCGAGTTGGTGCTGCTGAATCCAGACACAGCTGTCGCGCCTGGACTGTCACTGACGGCGACCCTGCAGTTCTCGCCAGACAGAGATGAAGATCTCAAAGAGCGATTGATTCTGGTCTCCGATGACGATGTGCTGGAGATCCCGATTTTAGCGTACGTGGATTCAGAAGTGGACTTCGGCTCACTTGTCGCAAACAGCAAGGTTATCAGTGAGGAGATACATATTTTCAACCATGGATCTGCCCCagGTGCTTTCAAAATCGCATATAAAGGAGCTTCGCCTGTCAACATTTCTCCTACCAGCGGGATTGTTGAGCCCAAAACAATTCAGCTAATTAAAGTTGAGCTGTGTACAAACCAGCCAATGACTGTCAATGAAGTGGCAAAAGTTAAACTGCAGGATAGTgaggatacatttttaaaaatcaaagctGAAGTGGTGGAGCAGGCTTTGGAACTGTTAGCCTCCACTGCCAGTGGGGAGAGACTGGAATTTGTGAGGTTTGGAGCTGCGTACTTTGGAACAGCCAAGCTGGAGCAAGTGGTTTTGTTCAACAACAGCCCCCAACCCTGTGACTGGGTGGCAGTGCTGCAAGATGATGCCATTGGTACTGAAGTGGGCACTGATATAGAGAAGAGTACAGCTGCTGCTCTACTGCAAATGGCGCTGAGAAATAAAGGGAAGGAGGTTGATGCTGCAGCACTGATCTCATGTCTTCCCAATGAAGGCCATCTTGGGCCTTATGGAAAGATCATGCTTTCCCTGTGCTTCAGTCCGGCATACATCAgGAATCTAGAGGATGAAACTAATTGTGATGAACCAGCAAAACAGGACTATTCCCTTTTCATGAAATTTGAGATTGTTGGCAGCAAAGACAGTTTCATTCATGACCAAACCAGTGGAAGACATCCCAACAatgaaaataaactgaagtgtACTGAATTAGCAGTAACCGGGACCGGTCTGCCAGTGTCTCTCACTCCTACTCCGGGACCATGCTTTGATTTTAAGGAGATCTATATGGGGGAACGTGTTGAGATGCTGTGTGTGCTCCAAAACAGGTCCCCATTGCTTCCTGTAGTCTTCAGATTCCAAAAAACAGCTAATTTCATCATCTCTCCTTCAAAGGGGAAAATAGACTGTGGACTGCAGCAGgatGTAGTATTGTCTTTTGCTCCGCATCAGATTGGATCTTTTACAGTTTGTCAGTTAATAGACATATTTGGCCAAGTGGCAGTGCTTGGCAGATCCTCTGTACAGCTGAAGTTCAGGCCTTTCCATCAGATTGGTCTCCGCTTTTCTGGCACCTGCAATCCTCTGTCCAAAAAGATACAACCCAAGTTCAACCCAGgcATAACCCCTGCAGTCACCAATGAGACAGGGCAGTGTGTGGAGGTAGACGCGGAGAAGCTGGCGAACTGCTCAAACATGGTCCGGATGGCAGTGCTGAGTGCTTCTAAAACAGGCATTCATGCCCATAGGAGGAGCAGGAGTCTGGAGAGAAACAAGCTGATTGCTTTTCCCAATGATCGCTCTGCCAGTATCAGGCCACACTCCAGAAATGAGCATTACAGGACAATCTTTACCAAAGCTGAACGGTACAATTATGTGGATCCTGAGTTTGCCTATACTGAAGAAgaggaaaagcaaagaaaagcaCATAAAGAGTATTACCTCCAGTTCATTCATAATCTAAGAGATGTACGTCTTCAAAAGGCAAAAGAAAGAGAGCTGGGGGACACCAGAGATGAAGTTGACATTGGCATCAAACCAGCAGCAGGACTGCGGCCCAGAAGACTCTTGCTTCGTGACATTGAATCGGGAAAGGTAGAAGAAAGGTCTCTTGGGAGAAGTAGGCTCTTAACTACATGTACCCTGGCAGCAATGGAAACAAGGTCCACATCCAGACCAGTCAATGATGGGATTAATGTGGTGCCTTCAACCACTCAAGAAAAAGAAGACTGTAGCAAAACCTTGACAGCACAGCAGCTTCATCAGGTTATCATTGgaCCCTCTACCATAAACTTTGGTGACGTGTGTGTGCAGTCAGTCTCTTCAAGACAGCTGAGCATTGTGAATAACCTGCCAGTGTATGTCTGGGTACAGGTGGAGATTGACTGTCAGGAGCTGCAACAGTCTAGTCCTCTGTCTCACGTTGTACCACCTGTATCCAGAGCTTACTTGCCCCTTGTGTTTGAGACCAGTAAATTGGGCAAGTTCCAAAAGTCAGTTACCTACACGGTTAATAAGAAGCATGCTGGCCATATCCTGGTGGTGGGCACAGTTGTCCCAGTTTCTTTGGAGCTCTCAGCTGCCGAGATAGTTCTCAGCCCGAGCCACAACTTCCTGGCAGAAGCCGGGTACAGAGGCACTGTCACACTGACGAACCCGAGAAACCACCCGGCTGAGTTCACCTGGAAACCCATTATCACTGAAAATGGCATAGCTTTCTCCATTCGACCTGCTACAGGAACTGTGGAGGCCTACAGGGAGCTGGATTGTGAAGTGGTGTGGCATCCCTCTTACTACTCCCCACTAGAGGGTGTCTTTGACCTGTGTGTTCACCACGGCAACACCACCGGTCTTAAATGTGTTGCTAAGGTTGGTTCCACAAATGTGCAGTTAGTTGAACACCATATTGTATTTGGAGCAGTGGCTCAAAATTTTACTACCGTCAAAAGGGTTGTTCTTCGAAACACAGGACAAAACCATGCATACTTTCAGgtGTTTGATGTGTACCCACTGCCCGGGATGAGTGTGACCCCTTCAGAAGGTGTCGTGCCAGTGGGGGGGCAAAAAGAACTTGAGGTGCACTTCACCCCCAGCGCAGTTGTGAAATTTGACACCAGAGTGGAGATTGCAGTACGAAAAATGAAACCCTTGGAGCTAAGGATTGGTGGATCTGTGGAGCCCCCTCAAGTAGATATCAATGTGAAAAATTTCAACTTCCATGGCGTATATTCCGGTTCTACCAAAGCAATTCCATTCACTCTTCAGAACAAATCTGCTGCTAGGGCGAGAGTGGAGTTTGATTTGTCAGAGCACAAAGACTTTGCTGTAGTGTTCAGTGACCACTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87727 lncRNA upstream 18552 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 492693 13694815 ~ 13696871 (+) True G70054
TU87516 lncRNA upstream 505072 13683043 ~ 13684492 (+) False AMCG00014423
TU87409 lncRNA upstream 809160 13377534 ~ 13380404 (+) True G69961
TU87408 lncRNA upstream 809971 13352333 ~ 13379593 (+) False G69961
TU87784 lncRNA downstream 261690 14466704 ~ 14467744 (+) True G70271
TU87814 lncRNA downstream 974831 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 1034642 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 1145628 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 1245764 15450778 ~ 15451268 (+) True G70409
AMCG00014447 mRNA upstream 26242 14162125 ~ 14163322 (+) True AMCG00014447
AMCG00014446 mRNA upstream 28722 14160636 ~ 14160842 (+) True AMCG00014446
AMCG00014445 mRNA upstream 31838 14151299 ~ 14157726 (+) True AMCG00014445
AMCG00014443 mRNA upstream 46491 14138406 ~ 14143073 (+) True AMCG00014443
AMCG00014444 mRNA upstream 84070 14085512 ~ 14105494 (+) True AMCG00014444
AMCG00014458 mRNA downstream 18502 14223516 ~ 14235412 (+) True AMCG00014458
AMCG00014460 mRNA downstream 32997 14238011 ~ 14241495 (+) True AMCG00014460
AMCG00014461 mRNA downstream 97433 14302447 ~ 14342021 (+) True AMCG00014461
AMCG00014459 mRNA downstream 166131 14371145 ~ 14380019 (+) True AMCG00014459
AMCG00014457 mRNA downstream 247512 14452526 ~ 14462108 (+) True AMCG00014457
TU86705 other upstream 4180916 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 6772970 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 6840097 7346195 ~ 7349467 (+) True G68830
TU85565 other upstream 9537600 4649200 ~ 4651964 (+) True G68475
TU87778 other downstream 131844 14336858 ~ 14356868 (+) False AMCG00014461
TU88057 other downstream 1470617 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 1470617 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1924511 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 2260667 16465681 ~ 16469113 (+) False AMCG00014525

Expression Profile