RNA id: AMCG00014464



Basic Information


Item Value
RNA id AMCG00014464
length 915
RNA type mRNA
GC content 0.58
exon number 6
gene id AMCG00014464
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15022999 ~ 15043455 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGTTGCGCAGGAAGACATACTACGTAAAGGATCTGCAGGCAGAGATCGAGGCCCACACTGAGGTTTTCCACACCCTGGATGACAACGGGCAGAGGATCCTCAAGTCTCTGGAGGGTTCAGAAGATGCCACCCTGCTGCAACGTCGGCTGGATAACATGAGCGTGAGGTGGAGCGAGCTGCGCAAGAAGTCCATCAGCATCAGATCCCACCTAGAAGCCAGCACTGAGCAGTGGAAGAGACTCCATCTCTCgctgcaggagctgctggcGTGGCTGCAGCTGAAGACCGAAGAACTGGCCCGACAGAAACCCATAGGGGGCGATGTCCCAATGGTACAGAAACAGTTGGACACGCATAGGGCTTTCAAGAGGGAGCTGAAAGCCAAGGAGCCTGTCATCTCCAATGCTCTGGATGCAGTGAGGATGTTTCTAGCAGAGCAACCTACAGAGGGGCTAGAGAGGCTCCAGCCAGAGCAGAGAGAGGTGAGCCCAGAGGAGCGCGCCCAGAACATCGGGCGTGTGCTGCGGAAGGAGGCAGAGGACGTCCGGGTGGGGTGGGAGGCCCTGCGGGGGCGCACTGCTGACTGGCAGCGACGGCTGGATGAGGCACTGGAGCggctgctggagctgcaggaGGCGGAGGATGAGCTAGACCTCAAACTACGGCAGGCAGAGATGGTCAAACAGTCCTGGCAGCCCGTGGGGGATCTCCTCATAGACTCCCTGCAGGACCACATCGACAAAGTCAAGgcCTTCCGAACTGAAGTGGCACCCATTAAAGAGAATGTAACGCAGGTGAACGACCTGGCCTCTCACTTTGGCCCTCCAGACATCCAGCTCTCTCAGTTCAACCTAAACAGACTAGAGGATCTCAACACTCGCTGGAAGCTCCTGCAGGTGAGTCGCTGCTGCTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87784 lncRNA upstream 555255 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 823691 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 828566 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 851987 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 1326128 13694815 ~ 13696871 (+) True G70054
TU87814 lncRNA downstream 136390 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 196201 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 307187 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 407323 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 457103 15500558 ~ 15500832 (+) True G70413
AMCG00014467 mRNA upstream 33932 14920413 ~ 14989067 (+) True AMCG00014467
AMCG00014466 mRNA upstream 194878 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014463 mRNA upstream 211864 14767487 ~ 14811135 (+) True AMCG00014463
AMCG00014465 mRNA upstream 272380 14719894 ~ 14750619 (+) True AMCG00014465
AMCG00014462 mRNA upstream 330716 14684733 ~ 14692283 (+) True AMCG00014462
AMCG00014469 mRNA downstream 46240 15089695 ~ 15137536 (+) True AMCG00014469
AMCG00014468 mRNA downstream 120757 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014470 mRNA downstream 178459 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014471 mRNA downstream 204316 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014472 mRNA downstream 230106 15273561 ~ 15287276 (+) True AMCG00014472
TU87778 other upstream 666131 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5014351 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7606405 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7673532 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10371035 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 632176 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 632176 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 1086070 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1422226 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2360056 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile