RNA id: AMCG00014468


Basic Information

Item Value
RNA id AMCG00014468
length 5877
RNA type mRNA
GC content 0.49
exon number 6
gene id AMCG00014468
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15164212 ~ 15179155 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GAAGATGAAAGAAGGGTCGGAGGACTGTAGCCATTGGCGGGCCCATTGACTCCCATTCCCAGTGAAGAGCCAGCAGTCCTGGGATGGCGCAGGGCAGCCAGCAGGTGGACTATCAGATCCTGCATGACCTGAAACAGCGCTTCCCCGAGATCCCCGAGGGAGTGGTGTCTCAGTGCATGCTGCAGaacaacaacaatctgGAGCTCTGTTGCCGAGTGCTGTCGCAGGAGAGCAGCAAGTACCTGTATGGGGAATACCACAGCCCAGAGGAGAGCAGGATGAGCCGGAACCACATGCTGCACATCAACCTTGGCATTCACTCTCCCACAGGGTACCACCACACCGGGGAAGGGGGCAAGGTTAATGGCGGGGTGCGGACGCTGGTGCACAGCTCAAGCGACGGGCACATCGACCCCCAGCGGAGCGGTGGAGGAGGCGTGGGGACGAAGCAGCACCAAATGCTGTCCCTGCTCCAGGAGCCGCACTCTGCTCCTGCCATTGTGGCCCCCTCTCCTGGCTACAACCCCTTCTTTGTGAACGACCAGGGCCGCTCAGCTGGCACGCCACCACCTGCTCCTTCAGCCATGCCGGGTATCTCACCCACCTACACCCCTGTTCCCCGGTATGCCATGAACCCCATCACGGTCACCTTGTCCCAGAACATCCCCTCTGCCCCCCGTGCATTGCAGATCCCTGGCTCCCTTTATGCCACTGCCGGCAATGCAGTTTACATCCACCCTGCCTCCTCCCAAAGCCCCCAGACCTCCCCCTGGCATTCCCCCACTGCTCAGTGCCACATGCAGCCCTACAACCAGCAGCCTCCTCATGCCCTGCCAGTCTACCAAGCCTCTCCCTACCAGTCCCCTTATTCCTCCAAGCAGGTCCCTCAGACAGCCTACcgctcccctcccccctcccaatTCCCCTCACCATACAGCTCCCCCCAGCACCAGATCCAGCAGACCTCCCATGTCTTCATGCCAATCAGCCCCCCAACAATGACATCCCACCCTTACCaccatcagcagcagcagcagcagcaacagcagcagcagcagcagagttACCAACAGCAGCCTGGCCAACCCGTCTCCTACATCCCCTACCTGTCCTCTAAGGGCTCTCTAAAGAATCAAATCGAGATCACTCTGGAAGCCCCCCAGCGGCCTCACAATCGCAGCTCCTCTCCCGTTATgagccagcagcagcagcagcgaggTCAGAACACTCTGTACATCTCCACCAACCCGTCTCCCAGTTCTCCCTCAAGGGGCATGTCTGGAGGCCAAATGAGCTTGACGGGCCAGCCCCAGGTGGCATCCTACCATCCTGGCATGTACATCCACCAGGGCCCCCCTCGCCCCCGGCCCACTTCCTCTCCCCAGCCTGGTGTAGGCGGTGGGGTCCGGGTCACCCAGCCCGGGAACTCCACTTACACCTTCAAGATCAAAGTGTCGCCTGGCAGACAGGTCCAGCCACGGCACCTAGAGTCGCCCACGGTGGAGACGGAGAGCCTTCTGAACCTGGTGGAGCAGGGAGAGCACCCCGGCGCCCCCCAGCCCATCCAGCCCATCTCTGCTCTGCCCGGCACCATCACAGACCGAGCTGCCAGCCGCTTCCCCAGGAAGTCCAGCTCTGGCTGTGATGACTACGCCTACACTCAAGCCCTGCTCCTGCACCAGCGAGCCCGCATGGAGAGGCTGGTGAAGGAGCTGCACCTAGAGCGGCAAAAGCTGGAGAAACTGAAGGCAGATGTCAACGATATGGAGTATGACGCCCTGCAGCGCCGCTTCCGCAGGGTTAACGCCTCTGCCCTCATCCCACAGCCAGAGGAAATGACAAGACTAAGAAGCCTAAATCGACAGCTTCAGATCGACATAGACTGTACCATGAAAGAAATAGACCTCCTTCAGTCCAGAGgGAAGTTTGATCCAAAAGCCATGAGCAACTTCTACGACAACATACAGCCTGGTCCTGTGGTACCTCCCAAGCCCACAAGAAAAGTAGACAGCCCCAGCACCAAGACCCCCTCTCGAGGGCCGCAGAGGGAGGAGGAGTTCGAGGGCGCTCAGTGGAACTGCGAGAGCTGCACCTTCCTCAACCACCCGGCGCTGAACCGCTGTGAGCAGTGTGAAATGCCCCGCTACACCTGAGTGTCAGCCTGCAAACATCAGCCCCAGCATGAGGACGACAGAGGGCACGGccgaaaggaaaaaaaaaaaccgatCCCACCATTACCCAGGAGTGCTGATAGGGCCGGGACGGCCTGCCTCCGTGTTCACCACTGAAGACTCGGCTCCTCCTGCAGGGCATCGAGGCCGCCGGGGCTCACGCTTTCACATGGCTGATGACACGGTAAAGCCAACGGCCCCCTCGGGCGGTTGGGCTCGTCATACTTCACGTTGGGCTGCTTTtccacctaccgctgtctcgttCACTATGGCCCGTGGCAGTTGGGTGATGGGAAGTTGAGGACAGGGCAGGGTGACCCGAAAACACACGTGTTGTAAACTTGCTGGAGTACATGTGGAAACAAAGTTTACTttcgattttatttttttaactttttttagtCTGACCGTGGCCCATGCCGATTAGTTCACTGGCAAAGCTGCTATGGAATTAAAGGGGGgttgggtgggggtgggggggctgatgACTAAGGTATCTCCATAAATGCTGCTTCTATGAAGGTAACCACAGTTGTCACAAAAATGCAGGGTGATCGTTATCGTTTCATAGGATTGTAGAGAGGAGAGGTGTATGCCTCATGCGTACAGGGTATACAAGCTTGAGGTGTCGCACCAATCCCGAGCGCTTCTCCCAGACCATGGCCTGCGTCCTTCACAGCGGCCACTCTGTTCACGCCTGAACGGTGCCGCACGCTCTCTCCTGCTAcggaaatgcttttaaaagccTCTCGCCTTTCCTCAGATAAAGggtggttttttttgtttttgtttttttaataaatgaggTTTCCTttccaaaaagaagaaaaccagTTTCTGTAACAGCACAGCAAACTCGCACCAAACTGATGAACTCAAACCCTGCTCAGGAAGAATAGTGCAGCCATGACGAAGACCATGCGTGCTAAAGAGGTTTGCTTCCTGTTACAGTTCTGTCCGAGCTTCCattctgtggagagagagagagagagagagagagaaaaagactgCAACTTTTATGGCACAGACATCCCTAGTGAGCGCCCAACAAACTTACCATTGCTGACACACATGGGTTCCATATTGGTTTATTTGCACATAAAAGATAAACCCGATCTCTAAATTAAGTATGAGATTGTACACTGCGTGTGAATTTTTTAAGAAGGAAACAAATAGTGTTCACCTGTTGAATGAAGAACACTAAAGGACTCgcaaataaatatgatatttcTGGTACTTTATGCATATTATGCTATACTGTATTCTAAAGGTGATGTTTTCTTGTGCGGATGCTTCAGGTTgctgtaatattaataaagcaCTCGTTCTGTGTCCAATAATTATGGGGTCTGAGCGACACAAAATGTGTGAATACTGTGCGTGTGAATGTCTGTGTACgaatgtgtatttgtgtcctCGTTAAGAAGATATGCCCTTCTCCTTACTGCCTTTGTAGAATTCAgactcattttaatttagatttttttcgtTTTACATTTTCACCTCAGATTTCTGTGTtcggtatgtttttttttgttttttttaattaatagtacatttaattttgtacagCCTTTTTTGCTGTATGATGCTGTTACTAAGCATAGAAATTACTTTTTGAGTTGGTTGTTGACTTAGACACTGTCCCTGTGCTCTCCACATGTGCGTGTATGTTTGGTACAGAAGAGACTTGGGAAGTGGTAGTCTTTTTAGTTTGCTCTGCTGTTGGTGAGCTCCTGGATTAAGTagtgtattgcatttttaaggATACCTTCATTGCAGATACTGACAATCTGAATTATTTACAGCTTATTCACTGTATCGGATGAATCTGCTCATCTGTCGATCCCTAGAGTAATGGAGTTTTCCCTTACTCATCTTACTATCTTAAACCTTATAAATAACTTGATTTACAGTAAACAAGTCCTATTTCCCTGTGGATATTTTGCACAAAgtcttaaaacaataaaataaaactgcagatttGCATTTTACTCATCCTAAACACTGCTGCAACTTCAGACTTGAAGTCCTTTGttagtagaaaacaaaaatagaccGGTTCTCCCGTCGTCTTGGGTGATTTTCTCCAAGCTCTTCATTGACCGTGTCTGTGTTGCTGATTCACTCGTGTCTCATAGCTGGTAATCACTGCGGTGTGCACTATCGATTATAAGCCTTGTTACCACTGGCACTGTGCAACAGCCTTTACTGTAAATCTCTCTGAAATGCTGCTAGGTAGTGCGTTATTATTTTTGGAGCTCCGAGTGCAGCGTTCTGACTTGTTTTTGGTTCTTCCTCAGGGACAGAAGGGATGTAAGATGTGCCCTTGACACATTTCTTCCCAACAAAATGACACTTCTATCCTATAGTTCACATCGTAGCATGGATCTGTGTTAGTGTGTATATAGTTGTTAGTTTTATTGGGGTTTAGCCATAACTCATTGGATATGTATTCCCTGTGTAGTTAGTCTTTAAACTTCAACTGTCAAAAACCGTGTCTCTCtctacagtctgaacagatttCTTACCAATGACAGATTGTATATGAACTACTGACATGTTAGAGATCActgttggatttttttattttgttttatttattttattatttttgtaaggattgatacaaaatattgattcaCGCTGAAGACCTTTGACTAGAAAGCAGCCACTTCCTGCAGAGCACAGTACCACTTGCTGTTCAGTGATTGCAAGTTTACCGCCAATCCGTGTGCAGCGCGCTTCCGCAAGTTTGAAAGAGGAACCCTGAAATCTAGTTTGGTTTCATTCAATTGAGATGCCTATTGATCTGTAAAACTGGTAATACGAATGCATATACACTTCATGCTGTCTGACTAGATAGTGTACAGTGATTGAGCCGATGGCTGTGTATTTGATCTGGAGCTCCATCCTCTTGGCTTTCCTGGCTGACCGGTGTTTGTGGTGTCCAGCAGCTAGATAGGTGTACCAAACCAGTTTCTTTTTGGAGAGCACTGTTGGGAGTAATATGAAATCTGATTTAAGCAAGGAGTTGTGCTGCCCAGCTGATTGTTGGTCTTTATTAGCAGGACTTGTCATATATTTCCAGAACCATGTTTCCTGAGGTGCTTTATGCCACACTGGCCTATGGAGTCTCTTCACTGTAAATGTCCActtgtcttttagttttttgcccCCTCTTTTACTTTTCTGGATCCTCTGTGCCACTCACCATAATGCACTGAATTGTACAAAGGCAGCAGGGCCAATGCATGTGTGCTACTGTCAATAGGCAGAACCCGCCGCGCAGGGTGGGTATAATCCTTTCCACTCAGAAGTGAAAGTGAGAGAACTGTACGACAGCAGAAAATGACTGAAGCTGTTCGTTGTGTAAACCAATGTAAAATGCAGCACTGGAAAAAATGTCTGACATGAACCTACACCTTGGCTCCCTTATTTGGCTGCATAGACGAAGCTTGAATTGACTCCATTCACCCATCAGGCATGCGACTGTCCTGGTCAGGTCTCTCCATGCAGGCTGGTAGAGTCCTGCTGTTGCTACCGTTCATACACCCACCTCTCCATGGAAAAGCTCAGGTTTGCAACCTGATTTAagattgtaaataatgtaatatattcaaaaaaataaaatgtataacaaatgcgtccatatgtttttattgtttatgaatgttaatgtacatttttattttttaaattggtc

Function

GO: NA

KEGG:

id description
K12793 MAP3K7IP3, TAB3; TAK1-binding protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87784 lncRNA upstream 696468 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 964904 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 969779 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 993200 14167446 ~ 14171012 (+) True G70221
TU87518 lncRNA upstream 1467341 13694815 ~ 13696871 (+) True G70054
TU87814 lncRNA downstream 690 15179845 ~ 15180820 (+) True G70286
TU87887 lncRNA downstream 60501 15239656 ~ 15242333 (+) False AMCG00014470
TU87927 lncRNA downstream 171487 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 271623 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 321403 15500558 ~ 15500832 (+) True G70413
AMCG00014469 mRNA upstream 26676 15089695 ~ 15137536 (+) True AMCG00014469
AMCG00014464 mRNA upstream 120757 15022999 ~ 15043455 (+) True AMCG00014464
AMCG00014467 mRNA upstream 175145 14920413 ~ 14989067 (+) True AMCG00014467
AMCG00014466 mRNA upstream 336091 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014463 mRNA upstream 353077 14767487 ~ 14811135 (+) True AMCG00014463
AMCG00014470 mRNA downstream 42759 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014471 mRNA downstream 68616 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014472 mRNA downstream 94406 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014476 mRNA downstream 153774 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014480 mRNA downstream 186541 15365696 ~ 15371378 (+) True AMCG00014480
TU87778 other upstream 807344 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5155564 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7747618 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7814745 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10512248 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 496476 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 496476 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 950370 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1286526 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2224356 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile