RNA id: TU87887


Basic Information

Item Value
RNA id TU87887
length 2650
lncRNA type sense_over
GC content 0.35
exon number 2
gene id AMCG00014470
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15221914 ~ 15242333 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TAGACACCCCAACCAAGAGAGCACCACCTTTCGGTACTGAGGCAAAATGAGAATGATGCAGAACTTCACAGCACCCAGGCGGCGCTGGATAAAAGTGCACCGTGCATTTTCCCCACTGCTCTCTCTATCTTAAAACATGCTGACAGAGAATGGGTGTGGAAATCGAAGTCGTTTCCCAGCAATCTCTCcaagagaaacaagaaaaggaaagataCACTGGGCTGTTCAAAGCAAGTGTCATTCAAAGTATGCAAGAAACTCATTCAGTATTCTATGAATCAGAATGTTATGTACAATTACCGTTTTTATAGCACTGTTCTAATTCTAAAAACAAAGTTCgtgaaattttaaaaagtagtaGGCTAATATCTAAAATTCCAAAGGCTATATAAGTTATAAGTAAGAGTAAGTGCAAGATTTTAATAACAtgaaggaatatatatatttatatatatattgagggGCAAGTGTGCTGAGAGCCAAAGAGGTACTGAAGACTTCATGCAAACAGGTTGACTTGGAAAGCATTCTGCATTAATGAGCGGCAGGGAAAGCCCCAGTTTTGTTCCTGGGGGCTTCCTGTATCTGCCTTTTACTTCCCATACTGAGGGGAGAATGGGGGCTTCAGGGAATAATCATCCCTTCCATTCTGAAATCCTTCAGTACATGGCTCTGGAAGTGTTGTGTCCACTTATCTGTTTATGCTCACAAGGTGAATGAAATGGAATGGGATGAATCCGACGGCATCAATACACTGAGTTCTGCTCGTCTGCATCAATAAACACAATCAGATGGCATGCAAGAAAAGTGCGGAAACAAAGGAGAATTTCTAGTTGTTCTACCCtacaatgtgtaatttaaagatCAATAGATAATGtggtattgtttaatttataccATTTATTATCTAGAAATAACTTTTTGTACTGGAATATACAGACAAACTACAACATGATATGAAGGCAGCtgagttttttgttctttatacaACACTGCCCTCCCCCACTTCTGTGAAACTGAGTACTTCATCGTTTGCCTAAAGGAGATCAATTCAAACAATTCCTTTTACAACTATAGCGTGTTAGCGCCCCCTTGTGGAAAATAACAGGAGAGTCAAACCAGATGTTCTTTGTGCATTAACACTGTATATAACTGGACCTTTtagatatttaatttgttaaaatgttttacaattgaATTTACTTTTAACACTATAgataagtgtatttatttatatttattttgtttacaggaaTTTGgatatattcaattaattaaaaaatacaagaaatatcCTAAACACATTACATGTAAATTGTATAGATTCTGAAGGTTTTTAACAAATTACCCCCCCAGGGTACAGTGACATTATGAAAAGCTATTATACAAACACTgtataatattcaatattcaattcaaGGTAACTTTGGTATATTAAGGTATGAAAAGGAAGAAACgaaacaagaaacacatttaatgacaaaaagaagaaataaagagaTAGATGTGTGTGAATACATATCTATAACTGACATTgcaaaataaatatattcaatgcttttttaatttgccGATTTAGACTTTAAATTCTAatttttatattgaattatCGCTCAACTTCCTAAtgtaaagattatatttttatagcaaCGCTTCTAATTTTTATATCTGTACGGAGTGTAAATACTTTTGCttattttcattgtcttttttttttttaaacattgtgtgtgGTCATGTAGAttctactgaaaaaaaaaaaactagaaaacgTCATCATGTTTCAGGTCCTGTTGGCTTTGTATTGGCATTATGTTCTGTATGAAATAATGAAAGGCCAGAGGTATGTGCACATGTTGTTTGCTCACAGCATAAGCGGTGTCAAAATGAGATCAATAAATGTAGACGTCCACTGAATCATGAAAGTAATGAAGCATTGTGTTTTCCATACATAGAAAAATACTAGAGCTGTCACTtggcaatatttaaaaaaaaaccaggCCTTCATTTTCAGTCCTGGTCATCTGAAATGCAATAATATGGAACACAGTTTTATTGAAGAACTctatagataaaaaaaatatattcatctGATAAGGAGGGAGGCGATCTTTGGCTTATCATGTCAAAATCATTCTCCGCATTGAGGCGGATATACAATACTGggttttcacagcactgcagaACAAAGCAAGCTTTAGCAGCGAAAACAAGTCAATGTAGCCTAAGTAACAAAGGGTGTCTTTTACacagataaaacaaatcaaaaatgcCTTTGTCTCTCAAGGTCGGGAGTCTAGCATCCTTTCAGACACTGCAGTCTCTCCCATGCAGACTTCTTAAACTCTCATCCTTCTTGTTGTAGTTTACTCAGATATCTGCCATGGGAAACTGCCTCCTACAATATGTGTATACAACAGAAAAGCTAAAGTACAGTGGTAGAAAGGGCCTTGTATAGCTGCGGTGTGCTCAAATCTGACCGCTTACTTTCGGTTTACTTATGGAACTCAGCACCTATGAACAAACTATTGTTTTATCAACTGTTTCATGAACTGTAATGAATGTCTCCTTGGTTGACTGTActgtatgcaaaaatataaactgtaaatgtgGTAAATGTGtgctaattaaattaactttaattattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87814 lncRNA upstream 58836 15179845 ~ 15180820 (+) True G70286
TU87784 lncRNA upstream 771912 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 1040348 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 1045223 14193779 ~ 14194433 (+) False AMCG00014456
TU87727 lncRNA upstream 1068644 14167446 ~ 14171012 (+) True G70221
TU87927 lncRNA downstream 108309 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 208445 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 258225 15500558 ~ 15500832 (+) True G70413
TU87979 lncRNA downstream 263481 15505814 ~ 15506048 (+) True G70415
TU87982 lncRNA downstream 280192 15522525 ~ 15525015 (+) True G70418
AMCG00014468 mRNA upstream 60501 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014469 mRNA upstream 102120 15089695 ~ 15137536 (+) True AMCG00014469
AMCG00014464 mRNA upstream 196201 15022999 ~ 15043455 (+) True AMCG00014464
AMCG00014467 mRNA upstream 250589 14920413 ~ 14989067 (+) True AMCG00014467
AMCG00014466 mRNA upstream 411535 14823792 ~ 14828121 (+) True AMCG00014466
AMCG00014471 mRNA downstream 5438 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014472 mRNA downstream 31228 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014476 mRNA downstream 90596 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014480 mRNA downstream 123363 15365696 ~ 15371378 (+) True AMCG00014480
AMCG00014486 mRNA downstream 237119 15479452 ~ 15485053 (+) True AMCG00014486
TU87778 other upstream 882788 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5231008 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7823062 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7890189 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10587692 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 433298 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 433298 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 887192 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1223348 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2161178 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile