RNA id: AMCG00014476


Basic Information

Item Value
RNA id AMCG00014476
length 2434
RNA type mRNA
GC content 0.49
exon number 4
gene id AMCG00014476
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15332929 ~ 15336221 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCAGCCTCGCCTCTGATTGACAGATGAGAAACAAACACGTGTTCCAGCGCTGGtgtgagccaatcacagacGCGCACCTCTGGACAACTTGCACTTCCGGGGTCATGCGTTTTAAAACAACGATGGCTGGACACGACTTGCTGTGCTTATGCGACTTGATCCGATTGCTGTGGTCGCTTTTGATACCGTGCATCTACCTGAGCTTGGCTCTGACTGCtctgctcttcctcctcatccTGCTCATCCGGCTCTTGCTTCAGCGGAGGAAGACGCGCCGTGACGAGCAGGGAAAAGCCCCGGTCGTGGCCTTCTTCCACCCCTACTGCAATGCAGGAGGCGGCGGAGAGAGGGTCCTGTGGTGTGCGCTGAGAGCCCTTCAAAACAGGTACAAAGATGCCTCCTTCGTGGTGTACACGGGGGACCAGGGCGTCACAGGGGAGCAGATCCTCGAAGGCGTGCGCAGAAGGTTTAACATCAGGCTGCCTGGGCCGGTGAAGTTTGTGTTCCTTAACTATCGTATCCTGGTGGAAGCCAGCCTCTATCCACATTTCACCTTGTTGGGCCAAAGTCTGGGATCCATTGTGCTGGGATGGGAAGCACTCGTAGAACTGGTCCCTGACGTCTACATAGACTCTATGGGCTATGCCTTCACCTTGCCTGTGTTCAAGTACCTGGGAGCATGCCGCACAGGGAGCTACGTGCACTACCCCACCATCAGCATGGACATGCTGTCTGTGGTTCGTGAAAGAAACCCCAGCTTCAACAATGCAGACTTCATTTCGGCAAACCCCATTCTTAGCACCCTCAAGCTGATCTATTATTgcatgtttgcctttttttatggCCTGGTTGGCTCTTGCAGTGATGTTATAATGGTGAACTCCACGTGGACCCAGAACCACATCCTGGCTCTGTGGAGGTGCCGTGACCGCACAAGCGTGGTGTACCCGCCCTGTGACGTGCAGACCTTCCTGGACATCCCACTGGAGGGTGACGACGAGAAGAAGAGCCACAGCATTGTCTCAGTCGGTCAGTTCAGACCAGAGAAGGACCACCGCCTGCAGATCCGAGCATTTCGGAAGTTGTTGGACAAGAAGACGCCAGCGGAGCAGGCCTCCCTCAGGCTGGTGCTGATTGGCGGCTGTCGAAACCAGGAAGACGAGGACAGGGTGCTGCAGCTCAGAGGGCTGTGCCAGGAGCTGGGAGTTGGGGACAAGGTAGAGTTCAAGTTGAACATTCCATTTGAAGAACTGAAGAAGGAGCTCACTGAAGCCACCGTGGGTCTGCACACCATGTGGAATGAGCATTTCGGAATAGggATCGTGGAGTGCATGGCGGCAGGAACAGTCATTCTGGCCCACAAATCTGGAGGCCCAAAACTGGATATTGTGGTACCCCATGAGGGAGGGGTGACGGGGTTTCTGGCAGATGATGTAGACAGCTATGCAGAAGCCCTGGAGAAGATCCTGGCTCTGTCTCCTGAGGCCCGGCGGGAGATCAGGCACAATGCCCGCCTGTCAGTGGCTCGCTTCTCCGACCAGGAGTTTGAGGCCTGCTTCCTGTCAGCCACAGAGCCGCTGATGGGGGAGACTCTGCAAGCCACTCTACCTGCCAGGTAGCCTCCCttgctgtgactgtgtgtttaCACTAAAGGAGATCTCTTATAAAACGCATTGAGTACCAATAACCCTGGCCAAGTCTAATGAGCTAAGCACCACTAGTTTTCAGCAGTAGTAATTCCATTAATTCCCAGCATTATTTACTGCAATGCTTAGCTGTATCCTTGAAACTGATGTGCAAAACTATTACCCACCTCTATACAGTTGTAAACCTCTAATAGGAGAATGTCATAACTAGCGAGAACTACAGCAGCctacatgttttctgtttttgattttgtcacCTTAATTGATTCAGGAAGGATCAATACAATACATGCTGTAATGCACTTTAATAGTTCCAAAGGACAATTTCAAGTTGTCAGATatccattacattattttaaaaggaaaaaaagatatGACCAACCATTGTAAAATATTACGCTCTGCTGCCctaatttatttccaatatttCAGACCCCATTTTAAGTCTCATCAACTTTCCTGTGATAAtgctgtaaatattattttgtttctcagagTGTTAAAGGGAGATGGAGTGTAATGGCTCAGACAGTGTAATGTGATGTATAGTGTGTATAATGTCCTGTAGTaagttacaaataaaaacatctttaatTGTTCAACAAACGTTCAGACAGACAAGTTTAGCACCCCATAACTTCTCTGCTGATTTCTGATCGGTGatattactttgttttgaaattttGTCCATGActatttgttaataaaaacaccTTGATTGATACTATTGGTTACTTACAGCATGATCAGTTCTCTGagaattttattaaaaaaaatgtcaaggcCA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004377 GDP-Man molecular_function

KEGG:

id description
K03844 ALG11; alpha-1,2-mannosyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87887 lncRNA upstream 90596 15239656 ~ 15242333 (+) False AMCG00014470
TU87814 lncRNA upstream 152109 15179845 ~ 15180820 (+) True G70286
TU87784 lncRNA upstream 865185 14466704 ~ 14467744 (+) True G70271
TU87767 lncRNA upstream 1133621 14197980 ~ 14199308 (+) False AMCG00014456
TU87766 lncRNA upstream 1138496 14193779 ~ 14194433 (+) False AMCG00014456
TU87927 lncRNA downstream 14421 15350642 ~ 15430852 (+) True G70378
TU87973 lncRNA downstream 114557 15450778 ~ 15451268 (+) True G70409
TU87977 lncRNA downstream 164337 15500558 ~ 15500832 (+) True G70413
TU87979 lncRNA downstream 169593 15505814 ~ 15506048 (+) True G70415
TU87982 lncRNA downstream 186304 15522525 ~ 15525015 (+) True G70418
AMCG00014472 mRNA upstream 45653 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014471 mRNA upstream 78958 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014470 mRNA upstream 90623 15221914 ~ 15242306 (+) True AMCG00014470
AMCG00014468 mRNA upstream 153774 15164212 ~ 15179155 (+) True AMCG00014468
AMCG00014469 mRNA upstream 195393 15089695 ~ 15137536 (+) True AMCG00014469
AMCG00014480 mRNA downstream 29475 15365696 ~ 15371378 (+) True AMCG00014480
AMCG00014486 mRNA downstream 143231 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014481 mRNA downstream 159004 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014482 mRNA downstream 181650 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014488 mRNA downstream 263938 15600159 ~ 15617165 (+) True AMCG00014488
TU87778 other upstream 976061 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5324281 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 7916335 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 7983462 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10680965 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 339410 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 339410 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 793304 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 1129460 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 2067290 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile