RNA id: AMCG00014481



Basic Information


Item Value
RNA id AMCG00014481
length 1008
RNA type mRNA
GC content 0.50
exon number 2
gene id AMCG00014481
representative True

Chromosome Information


Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15495225 ~ 15499833 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ttAGTAATTGCCTCTTCTTGTCTGGCAGGATATATCTGGCCATTGCCTTCTATACTGTGTCCAATCTGGATTTACCTGGATGTGCTCTTTTCAACGGCATCCATCATGCACCTGTGCGCGATCTCTCTGGATCGTTACATTGCCATCCGGAACCCCATCCATCACAGCCGCTTCAACTCCAGAACAAAAGCCTTCATGAAGATAATTGCAGTGTGGACCATATCTGTCGGGATATCCATGCCTGTCCCAGTGTTTGGCCTTCAGGATCCCTCCAAGGTTTTCAAGGATGGCAGCTGCTTCCTGACAGATGACAAATTTGTTCTCGTGGGCTCATTTGTGGCCTTCTTCATCCCCTTGACCATCATGGTGGTCACCTACTTCCTTACAATCCACGCCCTTCAGAACGAGGCCACCATGTGCTTGGATGAACTGGTTCCCAAGACCAGGTGGACGTCTTTCAGTTTTTTGCAGCAGAGCTCTCTGTCCTCCGAAAAACTGTTCCGCCGCTCGCTGAGTCGAGAGACAGGCCTGTATGGGAGGAGGTCAATGCAATCTATCAGCAATGAGCAGAAGGCCTCCAAGGTCCTGGGGATTGTGTTCTTCTTGTTCGTGGTCATGTGGTGCCCGTTCTTCATCACCAATGTGCTGGCTGTCATCTGCAAGGACACGTGTGACCCAGACATCATCGGAGGGCTCCTCAACGTGTTCGTATGGATTGGCTATTTGTCTTCTGCAGTCAACCCTCTTGTTTATACGTTGTTCAACAAGACGTACCGCTCTGCTTTCTCACGCTACATCCATTGTCAGTacaaggaggagaagaagcCACTGCAGCTCATACTGGTGAACACTCTGCCTCCATTGGCTTACAACTCCACACAACTTCAGCTGGGAGACATGGGCCCCTTGAAGAACGGCAGGCGAATGGGAGGAAAAGACTACTCTTTGGTTGCCATAggaattaataattttaatacttCAAAACCCAGTGCAGGGCAGGCCAATGAA

Function


GO:

id name namespace
GO:0007210 serotonin receptor signaling pathway biological_process
GO:0006939 smooth muscle contraction biological_process
GO:0046883 regulation of hormone secretion biological_process
GO:0050795 regulation of behavior biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0043198 dendritic shaft cellular_component
GO:0004993 G protein-coupled serotonin receptor activity molecular_function

KEGG:

id description
K04157 HTR2; 5-hydroxytryptamine receptor 2

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU87973 lncRNA upstream 43957 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 64373 15350642 ~ 15430852 (+) True G70378
TU87887 lncRNA upstream 252892 15239656 ~ 15242333 (+) False AMCG00014470
TU87814 lncRNA upstream 314405 15179845 ~ 15180820 (+) True G70286
TU87784 lncRNA upstream 1027481 14466704 ~ 14467744 (+) True G70271
TU87977 lncRNA downstream 725 15500558 ~ 15500832 (+) True G70413
TU87979 lncRNA downstream 5981 15505814 ~ 15506048 (+) True G70415
TU87982 lncRNA downstream 22692 15522525 ~ 15525015 (+) True G70418
TU88084 lncRNA downstream 227601 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 418580 15918413 ~ 15918621 (+) True G70562
AMCG00014486 mRNA upstream 10172 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014480 mRNA upstream 123847 15365696 ~ 15371378 (+) True AMCG00014480
AMCG00014476 mRNA upstream 159004 15332929 ~ 15336221 (+) True AMCG00014476
AMCG00014472 mRNA upstream 207949 15273561 ~ 15287276 (+) True AMCG00014472
AMCG00014471 mRNA upstream 241254 15247771 ~ 15253971 (+) True AMCG00014471
AMCG00014482 mRNA downstream 18038 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014488 mRNA downstream 100326 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014489 mRNA downstream 130357 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014487 mRNA downstream 157096 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014490 mRNA downstream 175950 15675783 ~ 15685899 (+) False AMCG00014490
TU87778 other upstream 1138357 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5486577 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8078631 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8145758 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 10843261 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 175798 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 175798 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 629692 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 965848 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1903678 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile