RNA id: AMCG00014487


Basic Information

Item Value
RNA id AMCG00014487
length 5688
RNA type mRNA
GC content 0.58
exon number 20
gene id AMCG00014487
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15656929 ~ 15671148 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGCCTGACGGAGGGAGCTGTGTATACAGCGTTACGAGAATGAAGACGAACTGGGGGGTCTCAGTGTTTGAAATACAAGGGTTTCACTTGTAATTTCAAGGGAGAAGCCCCCCACAAACAAGCAACAACTGCAAATCTGGATACTGCATCGATTGAACACTTAACGGTTGCAGCCCTGCAGAATGTCCAAGATCAGGAGGAAGGTAACAGTGGAGAATTCAAAGACCATTTCTGACAGCACCTCCCGCCGCCCCAGCGTGTTCGAGAGACTTGGGCCCAGCACTGGAAGTAATGCCGAGACACACTGTCGAAACTGGCTAAAGACTGGTAACTGTATTTACGGAAATACCTGTCGTTTCACACATGGAACTCAGCCCAGAGGCAAAGGTTTTAGTGGTTCATACAGAAGGTCACCTGAGAGACCAACTGgagatctgagagagagaatgaagaaCAAACGCCAAGATGTGGAACCTGAAGCTGCTAAGAGAAATCCAGAAGAGCCCACCTCTCCCACAGCTCGAAGAGACTCTTCAAGAAGCAGACATCGTGAGAAAGAAGATATAAAGATAACAAAAGAGAGAACGCCAGACAGTGAAGACGAGCCTACTGAATGGGAGGCCAACCGGGAAGactCGGATAATGgagattatgattatgaattgTCCCTGGAAATGAAAAGGCAAAAGATTCAGCGTGAGTTGATGAAGCTGGAGCAAGAAAACATGGAGAAGAGGGAAGATATAGTCATCAAGAAGGAGatCTCTCCTGAGCCTGTCAGTTCTAAAGGATCCCCTTCATCAAGAAAATCCAGTGGGTCACCTAAACACAAAGCAGCCACTAAAGGTGCTTCTGCaagcaagaaagagaaaaagacgTCTGTGATTTCCTCACCTGTATCCGATCAGACCAGGTCTTCCAAGGCTGTCCACGGAAAAAAGAAAGGCCCTCGGACCCCCAGCCCACCACCTCCTGCCCAGGAGGAGAACCCTGTTGGCaagaaacacaaaggaaaacacaaaactaaagagAAGATGGAGGAGAAACCCAAGGAGCCCAAAGAAAGGGGCCGGGACACGGAGAAGCACAAGGAAAGGAAGGAGAAGCGAAGGGATCGCTCAGAAAGCTCTCACAAGCTGAAGAGGTCCTTAAGCCCGGAGGACCAATCTGGCAGCACGTCTTCGCCATCCAGAGAGATTTCCCCCTCCACACGCAGGAAATCAGCCTCTCCCAATGCACCCAGACCTGCAGCACAGAAACCCCTGCCCTCCCCATCCCGCAGGTCCCCTGCATCCCCACGGCATCGCCGcacccccactccccccagGCACCACTCGCCTTCCTCCCACTCAGGCTCCTCCGCTCAGAGACACTCCCCCTCCCCTCGACGCAAGCGCTCGGTGTCGCCCTATCAGCGGGAGCCAGCCACGTCCCCCACCCAGAGACGCTCGCGCTCCCCGGTTGCGCAGAGGCCCTCCTCCCCACCACAGCGCCGGGCCAGTCCCAGCCGGAACCAGTCCCAGGGCAGAGATAAGGGCAGgcctgagagggagaggagcaCCCCGTCACACGACCGCCGCCATGAGCGCAGAGATGAGAGCcgtgggaagagagagaaggagggccGTGAGGAGCGCGAGTACGACGCGGAGCCCAGTTCATCACGGGATACccgggaggagagagagagcagagaggagcGGGGGCGGCGTGAGACCCGGGACCGCAGGGACACCCGTGACACCAGGGACACGCGTGAGCACCGCGACAGCAAGGACACGCGGGAGCCCCGGGCGGAAGCACGCTCCACACGCGACTCGCATGACTACAGAGAGCGTGACAGAGAGCGCGACCGAGAGAGGGACCGCGGGGACGCGCACAGGAAGGACGAGCCCTTTCAGGAGGAGAGGAGCTACGGCAGGGGCCATGCTAGGGAGGACAGTAGCCGCACCGAAACCAGGGCCGAGCTTCGCAATGACTCTAGAAATGAACCCCGGAGCGAGAGacctgggagagggagaggccgAGGCACTGAGCCGGCTGAGAAGGGAGTTCGTGGATCAAGAGGGACTCAGTTTGacagccacagcagcagcagcagcaacttcCATGACAACTGGGAGTCACGCAGCAGCTACCCCGAGCGCGGGGCCGAGCGCGGGGCGGAGCGCGGGGCGGAGCGGGGTGCCGAGCGCGGGGCGGAACGAGGGGCCGAGCGCGGGGCAGAGCGGGAGCGCTATGATGGAGACCGGCGGGAACAAGCCAGAGACTCCTCATTTGACCGCCGAGGCCATGCAGAACGTGATCGCAGGGAAAACCGAGACCGAGACACGAGACTGCCCTCACCAACAAGACACCAGGGCCGCAGCGATGACCTGGAGCGAGAGGACAGGAGAGACGAGCGCAGGGCTGACAGGGGGGAGGACAGACGAGAAGACAGGGCCAGGGAGAGGGAGCGTGACCGGGatcgggagagggagaaggagagagagaaggaacgggagaaggagaaggagcgggagagggaaaaagaaagggaGGCCGAGCGTGAACGAGCCAGGGAGcgggagcgggagagagagagggaccgggagcgagagcgagagcgggagagggagagggagagagagagggaaagggagcgagagagagtggagagggaggagagagagcgggagaggaaggagagggaacgggagagggagaggcagagggattGGGAAGACCGGGAGAAAGGAAGGGAGGAGCGACGGAGGGAGGAACAGAGGGAAGAGCGCACCGTCAGAGATGTGCATGAGGACAGGAAACCCAGCAGGAAGAGGCATCGTGTGGAGAGCAGCCCCAGCCCTCGACCCTCTCCAAAGAGAGCCAGGGAAGCCAGTCCAGACAGTGAAGGTGACAACAGCACCGAGGAGAAAAATGAGAAACACCGGTTGCTGAGCCAGGTGGTGCGACCGCAGGAACCCACTCGCTCCCCACCACGCACTGTGCCCGAGGAGAAGCCCAGCCGCTGGAAGGAGGAGGATAGGAAGGTGGAGAAGAAAGACAGCATCCGCACCAGACATGAGGAGCTGGATCTGCGGGACAGAGGCGCTGCTACCAGGGGAGAGCGTCCGAGGGAGCACCTCCTGGACATTGTCGCTGCAGGGGTTTCGGACACCCGCAGGACCAAGGAGCCCCTGGACACAACCCCACACCCCCCTGCTGAGGACAGGGAGGCTGCCCACGAGGAGGTCAAGAAGAAGACCAAATCCCAGAAGAAAGGCCTGAAGAAGAACCGCAAGGAGGAGGAAGTCAGCAGCGGTGCGGAGAGGTTCGCCACAGAGCAGCCAGTCGCCGAAGAGACCCCTCTGCTGTCTCCAAGGAAAGTGCCTAAGAAAAAAGCGGTGGAAAAGAAACGCAAGCGCTCACGAGGTGGGGAGTCGGACATCTCGGAGGAGGATACGGCGGCCCAGCAGCTGAGCAAGAAGAAAAGGGGCCCCAGGACACCTCCACTCATGGTACCTTCTGTAGTCAAGGAAGAGTTCCCAGTCCAGACTGTGGAGAAGGCTCCTCCTGTTGAGGTGATTCCACCCATCAAGGCAGACACCACCTTCAGCGACTGGTCTGACGAAGACGTACCTGAGCGTGGGGATATCGTGCCTCTGCCTCCTGCTGAGAAAGTCCCGCAAGAAGCTCCAAAGAAGGCAATCAAGGGCAAGGACAGGCTAGAACCACTAATCGCCCCCCTGTTGGCTCAGGAGCCGCCCTTATTGCTCCAGTTGCAGCAGCAGTTGCCCCTTCAGCCCCTGATGCCCCAGCACCTCATGCGCAAGGCCTCGGAGCAGAAGCGCAGCAGCAGCCTGGGGAGCAACCAGAGCCGCACCTCCTCGCGCCACCTCCGGTCCCCCTCCAACGAGTCGACGCACCGCGGTGGTGAAGACCACAGCGCCCGCAGGAGGAGGCTGCAGGGGGAGTCACGCGaccgggagagggagagagagcgggatAGAGAgcgggaaagagagagagcctCTGCCGCGGAGCCACCCATAGAGAGAAAGTCCCGTATCGATCAGCTGAAGCGCGGTGAGCCGAGCCGCAGCACGTCCTCGGATCGCCAGGATTCCCGGAGTCACAGCTCCCGGCGGAGCTCTCCGGAGTCGGAACGCCAGGCTCGCTCCCGGGCGGGATCCTACGACGGCagagagcgggagagggagCGGGAACGAGAGAGGGAACAGATCGAGAGGGACCGGGAGCGCAAGGATATCCGGCAGAGAGACTGGGAGCGGGAACCAGACACTCGGGAGTGGGGCCGAGGTCGGGAGCCCCTCCGAAACCGAGAGCCAAGAGACCGGGAGAGGGAGCCGCGCAAGAGGGACGTGGACCCGGAGAGGGACAGACACCTGCCCGAGGGTCACGACAGGGACCGGGAGAGGCTGCAGGACATTCCCATTCTCTGCGAGTTGAAGAGAGCGGAGCCAAAGCTGGAGAGAGACTTTGAGCCACTTCTGCGTGAAGTTGTGACTATAGACCCAGTTAGAGTGGACAAGAATGCCGAAATCCCTCGTGTCATGGAGGAAGCACATGAAGCAGCGAAACTGGACAACATGGAAGCGGAGGATGATGGGAAAGCCGAAGACTCACAGTCCATGGTGTCGGGTGGAGAGGAGTATGAACCCATCAGTGATGACGAGCTGGATGAGATCCTGGCTGACAGCGCACAAAAAAAGGAAGACCAGCAGGATGAGGAGAAAATCCCAGGTCCTCTGGATGTGATCGATGTGGACTGGTCCAGCCTGATGCCCAAGCAGAAGAAGGAGCCCCGAGCGGCCGGGGCTGCTCTGCTCAAGTTCACCCCAGGCGCAGTGCTCCTCAGGGCTGGCGTCTCCAAGCACCTGGCCGGGGCCGAGCTCTTCGCTAAGGTGAAGGAGACCTGCAAGGGAGAGCTGGAGGACCACAAAGATGCTGATAAGCTGTTTGAACATGAGCTGGGAGCCCTGAACATGGCGGCTCTGAACAGGAGAGAGGAAAGGGCCGGCCTGCTGAGGAACCTGGGGCCGTGCTGCAAAGCGCTCTGCTCCCGGAGAGACATCACCATCCGTAGACAGCTGCTCAAGAACGACAAGGGCACAACAAAGCAGATCTACACCAGTGCTCCAGTTGTGGACAATGAGCTGCTGCAGTTGAGCATCCGGTTGTTCAAGAAAAAGACTGCATGTCCGCTCCCAAGCCAGGAGAAAGTAGAGAGCAGCACACTCCCTCAGCCAAGCACACAGGCCGAAGTGTGCGTCTCGTAACATCTCAATCCCGCTGTGCGATTGGAAAAGACTTAATAGAGACTGGTGGATACTAGCCTATGGAGAGGATCCTGTGCATTGCACTGAAATTTGAATAGAGCAAAACAATTCTGTTATACTGTCATTTTTAgagcttttttttgtattactgttccATGTCATAGTTCTTTTTAACCAGCTGTACTGAAGTGTTGTTGTGCATCAGTTATTAAGCTGAGCATTAAAACTTATTGCTGTTTGTAATTCAGGGTGTTGGGTTATTTTTgcataaaggggaaaaaacatttgtgttttgtaaactGAGGATACTTAAATGTTGCTATGGAAAGCAAAATATTAGGTACATagtttattcaaatgtaaaaagcactgccttttaataaacaatactcACCTGGCCATTCCCC

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG:

id description
K22909 ZC3H13; zinc finger CCCH domain-containing protein 13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87982 lncRNA upstream 131914 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 150881 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 156097 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 205661 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 226077 15350642 ~ 15430852 (+) True G70378
TU88084 lncRNA downstream 56286 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 247265 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 565962 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 819263 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1059730 16730878 ~ 16733637 (+) True G70776
AMCG00014489 mRNA upstream 2084 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014488 mRNA upstream 39764 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014482 mRNA upstream 134448 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014481 mRNA upstream 157096 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014486 mRNA upstream 171876 15479452 ~ 15485053 (+) True AMCG00014486
AMCG00014490 mRNA downstream 4635 15675783 ~ 15685899 (+) False AMCG00014490
AMCG00014496 mRNA downstream 29006 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014494 mRNA downstream 44652 15715800 ~ 15725440 (+) True AMCG00014494
AMCG00014495 mRNA downstream 64497 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014501 mRNA downstream 109441 15780589 ~ 15781550 (+) True AMCG00014501
TU87778 other upstream 1300061 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5648281 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8240335 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8307462 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 11004965 4649200 ~ 4651964 (+) False G68475
TU88057 other downstream 4483 15675631 ~ 15679788 (+) True AMCG00014490
TU88058 other downstream 4483 15675631 ~ 15679788 (+) False AMCG00014490
TU88218 other downstream 458377 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 794533 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1732363 17403511 ~ 17448453 (+) False AMCG00014553

Expression Profile