RNA id: TU88058


Basic Information

Item Value
RNA id TU88058
length 2231
RNA type TUCP
GC content 0.43
exon number 6
gene id AMCG00014490
representative False

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15675631 ~ 15685899 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGATGCCTGACAAAGTTTAGATGCGTCTGTGCCATCAAatacacacaacagacacaccCCCTTACATTAGTTGCTGACCCTTTGGTATTTACAGATCTCATGTGTTCTCtgtatgcttttaaaaacaccGTTCATCAAttgagaaatataaatgtttctcCAAGTCTACAAACTCACCGGAGAGCTGCTTCTCCTGCTCCTCCCCAACGGGTGCGGGGTTCAAGAGGTGAGCGAAGACGGCGGCGAAGGGGTTTGCAGCCAGCGGCTCGGTGCGATACATCTCCCACAGCAGGTACAGGGCGGTCAGGCGCTGCGGCGAGCTGGGCAGGAGGTCTGGCTGCTGCAGCAGCATCACCAACACCGAGCCCACTCGGAAATGCTCGGCTTTCCCAAAGTAGTGATGGAAGGCAGTGGAAAGACCTTCAAAGGTGTTGGTGCAGGCTTCCTCAGAGATGATCCCCAACAGATTGGAGAGCTCCTTCGGGGCCAGCGTCATTGTTCTCTAACGGGGTTGTACAGAACCAAAACTGGAATTTATTCTTGAATTGTGTTCAAAAACGCGGGCTCATGGTACTAACCATCAACTGCACCCTCCTTGCAGTCCGTAACTATGGCCAGCATTCCTCCGTATAGCCCTTTAGTACCAAAAATATAGTAAACCgccacaaacacaacaaataacGGCTTTACAAGCAACCCAAACGTTTAAAAGTAAACCAgaacaaaatctaaaaataaaaaagacccATATGACACCAATATCCgtataaaataaacttcagtGTGTGAAACACCAGGGCTCTTTAAATACGGCACTGctgtcagtgttgtgtttttacgACAACCAAGGTGCATCATGGGAAAAGTAGTTTGGTTTACGTAATTCACGTTCCCGTAAGATTTAAACCATAGACATTCAAACAAGGACTTCCCTCGATAACTATGGTTTAATCATTGAAGTtgataattcatgtttttcagaaatgtttgattttttaagttaaaagtaCATcgtatatttatgtaatttactttTGCATACTCCGTTTCTTGTCACCGTTTCGTTGTTTTATTACAATCGCCTGTGTTTACGTACAGGCCGGCCTCTGTGCCCCGGAAGCGGTTCCTCTCTGCAGGTTTAGTATTACCCAGAAGCCCTGAAGTCCTTCCTTTCCGACATTTTCCCCGGCAGAATGGCTCCAATAAAGAAAGGTGGAGAGAAGAAGAAGGGTCGTTCTGCCATCAATGAGGTGGTGACGAGGGAATACACGATCAACATCCACAAGCGCATCCATGGCGTGGGCTTCAAGAGGAGGGCTCCTCGCGCTCTGAAAGAGATCCGCAAGTTCGCCATGAAGGAGATGGGAACTCCTGATGTCCGCATTGACACTCGTTTGAACAAGGCTGTGTGGACCAAAGGCGTGAGgaaCGTACCATACAGGATCCGTGTTCGTTTGTCAAGGAAACGCAATGAGGATGAAGATTCTCCCAACAAACTGTACACCCTGGTCACATATGTTCCAGTCACCACATACAAAGGCCTGCAGACGGTCAACGTTGAtgagaattaaaatgttctctgttaaaataaatttgtaAATCAAATCTTTTTGTTGTGTGGCTTTTCAAAATTAGCATCTTGCAGTTAGGGGTATATACTTTCTGATAAACTTtcaatgatttgtttgttgattCAACACTAGTGTTTTAGGTAGTActctttaaaaattaaaaccgATTGTGATACAGTAAACATTTCATAGTGCTGGGTTTAGTTTGAACTGTGCTATGTGAAAGATGCATGATttaaagtttgtatttacttGGTGATGTCTGGGTTTCATATAGAAATTATGGGTTACAATTACAACATTAAAAGCGGTCATTCTGACTATAGTGTACATATCAGTGAAACCTGAATTAAGATTAAACGTGTTTAAATTGATAGATATAGGGAATTGCAGAGCCTCTTCAACCCTGAGTCATTACGTTGCACATAGCAGGAGTTGAATTATAATTTTGCATCAGTTACCATGAATACAAGTATTAGTGTGAAAGGTCAAAAAGACCATTCGGGGAAGTACAGTTGAAATAAGGATGTTTTCAAGCTGCTGAATATCTTTTGCCTGGAAGCCACATCATGATGCccttaattaaaagcaaatacagCAGTAAAATGCACTATTGTCACTGCATGGATCAGAGAGGCTTTTACTTGGTAATATGTAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87982 lncRNA upstream 150616 15522525 ~ 15525015 (+) True G70418
TU87979 lncRNA upstream 169583 15505814 ~ 15506048 (+) True G70415
TU87977 lncRNA upstream 174799 15500558 ~ 15500832 (+) True G70413
TU87973 lncRNA upstream 224363 15450778 ~ 15451268 (+) True G70409
TU87927 lncRNA upstream 244779 15350642 ~ 15430852 (+) True G70378
TU88084 lncRNA downstream 47646 15727434 ~ 15728917 (+) True G70496
TU88167 lncRNA downstream 238625 15918413 ~ 15918621 (+) True G70562
TU88264 lncRNA downstream 557322 16237110 ~ 16240338 (+) True G70637
TU88391 lncRNA downstream 810623 16490411 ~ 16491118 (+) True G70735
TU88448 lncRNA downstream 1051090 16730878 ~ 16733637 (+) True G70776
AMCG00014487 mRNA upstream 4483 15656929 ~ 15671148 (+) True AMCG00014487
AMCG00014489 mRNA upstream 20786 15630190 ~ 15654845 (+) True AMCG00014489
AMCG00014488 mRNA upstream 58466 15600159 ~ 15617165 (+) True AMCG00014488
AMCG00014482 mRNA upstream 153150 15517871 ~ 15522481 (+) True AMCG00014482
AMCG00014481 mRNA upstream 175798 15495225 ~ 15499833 (+) True AMCG00014481
AMCG00014496 mRNA downstream 20366 15700154 ~ 15703459 (+) True AMCG00014496
AMCG00014494 mRNA downstream 36012 15715800 ~ 15725440 (+) True AMCG00014494
AMCG00014495 mRNA downstream 55857 15735645 ~ 15749118 (+) True AMCG00014495
AMCG00014501 mRNA downstream 100801 15780589 ~ 15781550 (+) True AMCG00014501
AMCG00014500 mRNA downstream 143488 15823276 ~ 15870879 (+) True AMCG00014500
TU87778 other upstream 1318763 14336858 ~ 14356868 (+) False AMCG00014461
TU86705 other upstream 5666983 10003058 ~ 10008648 (+) True G69406
TU86046 other upstream 8259037 7413640 ~ 7416594 (+) True G68848
TU86015 other upstream 8326164 7346195 ~ 7349467 (+) True G68830
TU85567 other upstream 11023667 4649200 ~ 4651964 (+) False G68475
TU88218 other downstream 449737 16129525 ~ 16132802 (+) False AMCG00014508
TU88385 other downstream 785893 16465681 ~ 16469113 (+) False AMCG00014525
TU88601 other downstream 1723723 17403511 ~ 17448453 (+) False AMCG00014553
TU88725 other downstream 2592066 18271854 ~ 18274360 (+) True G71004
TU89430 other downstream 7175554 22855342 ~ 22855646 (+) True G71525

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU446031 True 1101 lncRNA 0.38 2 CI01000206 142077 ~ 146208 (+)
mexican tetra (Astyanax mexicanus) TU446031 False 475 lncRNA 0.48 5 NW_019172900.1 136000 ~ 139374 (-)