RNA id: AMCG00014491


Basic Information

Item Value
RNA id AMCG00014491
length 2426
RNA type mRNA
GC content 0.45
exon number 9
gene id AMCG00014491
representative True

Chromosome Information

Item Value
chromosome id CM030128.1
NCBI id CM030128.1
chromosome length 42883965
location 15619162 ~ 15627108 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAGCACAGAGCGCACTGCACTGCGCGCCGTTGCCAGGGTCGTCTCCCCGGACACCAGGATCCTGCCGGACAACAAGAGCCGCGTCGCCTTTACCACCCAAGACCCTGCCAGCACTCCGGCCTTCAGTTCCGCTTCCCCCCGCTACGTCCCTGGACCTCCTCGGACCTGGCAAAGGGTGCATCTCCTGGGGGTGCTACAGGAAGACCCTCATTTCTATTCTCTGCCAGAGTTTACCTTGAATGATTTCTTGGAGGATCCCTCTTCCTGCCCAAGGCTTTACAGGGAACGTCTGAAGCAGCTTGTTCTTTCCCGCCACAACTACAAAAAACTGATAGAGCTCTTTTTAGCTGAGCTCCACAGAGGGAGGCAATCGGAAATCTCTACCCATGTGCTGTCCAGTGAGTCGGTGCCAGTGGCTACATCGAGGAAACCCCAGAAACAGATCATTTATGGATCAGAAATCCTTCTGAACTCTGTTACCACGCGGTATTTTCAGGGCTTTCGCTGCAGCCAGTCTCCCTTTCTGCAAGACAAGCAACATGGCGGTATATCCCCCTCAGAGCTGGCGATATTGGACTGCCTGGTGCAAGGAGGGCTTCTGCTGAGTCTGAAGGCCCATTTCATAGCTCGAGTTCCTGACCTGACACCATTGGCACAAACGTTGCTGTATTTAAACCTGTCCTTTAATGATCTGAGCATCTTTCCTGCTGAGGTATATGACTTACCTTACTTAGAGGTATTAAAACTAAGGGACAATCCCATTAAAGAGATCCCAACTGGCATACACAAACTCTCCCGACTGAAGACCTTTGTGATGTCGTTCTGCCTGGTGTCCTGTCTTCCTCTTGGGTTGTTCCTTTTACCATGCCTGCAGTTTCTGGACATCTCCTACAATTTGATTTCTTCTGTCCCCAATGACATAAAGAATCTGAGttcaattcaccTTTTCAACTGCAGGGCCCTTGAGTATCTGAACGTGGAGGGGAATCAACTGGCCGCCCTACCCTGTGGGGCCCTGAGGCTCACCTTGAAGCAGCTGAGAGTCACCAATAACTACATGCACCCGTACTTCTGGGCAGAGAGCACTCAGAACCAGCCCCAGAGGCTCAGCCACCTGGCAGCCCTCACTCTCTTCACCAGCCACCGGCGCCACAGCAGCCTGCCCAGTGACATTCAGCAAGACTTAAATAATGTGCGAGTTTGTGACTGCTGCCAAGGACCCATGTCTGGTCCTGGACTAAAGCTGATCAGGCCCTGTGAGAAGATATTTGGAGTCCGAAAACTGCCCTTCCTCTTCTCTGCCTGCTCTCCATCCTGCTACAAGAAGTTCAGCACTCAGACCACTAACCTCGTCCAGGTCCTCTACGGAGAGTCCTCTTCATAGCAGAGAAAAAAAGCAGGGGGAAAAATGCCTTCATACCAGATACGAGCCCTTTCGCTGTATGTGGTAATGTGTTGtttgaatgaaaagaaaattgtgGCAAATGCGTATATTTGTTGATGAAATAGTGTCAGTTTTATAGCACACAAGCTTCAGAGGGATCATCCATCATTTCATTGTGTCgtccaagaaataaaaaaaaatcatgtttttataaataaattgtttagATAAGATCATAATTAGGAAGTCATACTAGACGAGACAgttcttcttctctttttaaACAGAAGTGTGCAAAGTATTTGTATACAAAAGTCTGTTTTCTACGTTTATGGCAATAATATGTATTGGGTTTATGGGATACGTCTCTTTGAGAACTCCCAGCAGCCCCAGGCGGTTGTGTGTGAAAGGCAGTTATTACAGATAGTTGCTGCTGGGTTCTGACAGTGGGTTTACCTTGAGGGTTTATTTTCTTAAGCCTCATTAAAACACTGCGGGAAGTTTAACATTTGCTTTAGAGATTTCAGAAGTTTTAACTTAAGAGAAATCTGTACTTCCTTTGACTTTCCTCAGAACAGCATGTCATTTCCGCTCATGTAGGCACAACACTGTTTAGTATAACTTTTTTGCAGGTATTTTTTAGGtcgtttgttttttgttttccccaatcTTCTTTAATTTGGAACTATACATTACatagttttttccccattaCACCCTAACCATATACAATTTCCGCCAACCTGAATTACAtcagtattattaatacttcTACAATTGTGTAATCTAATGTTTTCACTAGTGGGTGACAATTGTAAGTTTTCAATGCATGTGCATAAATTACAAATTCACACTGTTGTTTTTGGAGTCTTTTTATGATCACAACAGCAGCAAATGTGTGAATTCAGAAATCTGTAGGGttgcaaaaataattaacaatctTTTGTAATTATGACTGAAGATGTGGTTCTAAGTAGAATAAAAGCTGGCAGATGTCAGACTGAACAGAGAGCAGCCAGCTGAGCCCTGCAAGAGTCGAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU87985 lncRNA downstream 94148 15522520 ~ 15525014 (-) True G70420
TU87990 lncRNA downstream 112651 15506304 ~ 15506511 (-) True G70425
TU87969 lncRNA downstream 232462 15383633 ~ 15386700 (-) True G70407
TU87964 lncRNA downstream 242388 15374238 ~ 15376774 (-) True G70402
TU87890 lncRNA downstream 376829 15238803 ~ 15242333 (-) True G70346
TU88034 lncRNA upstream 16511 15643619 ~ 15644914 (-) True G70458
TU88074 lncRNA upstream 73100 15700208 ~ 15702336 (-) False G70491
TU88073 lncRNA upstream 74387 15701495 ~ 15703314 (-) True G70491
TU88297 lncRNA upstream 585436 16212544 ~ 16214127 (-) True G70660
TU88319 lncRNA upstream 654577 16281685 ~ 16281899 (-) True G70679
AMCG00014493 mRNA downstream 23589 15590989 ~ 15595573 (-) True AMCG00014493
AMCG00014492 mRNA downstream 55161 15526728 ~ 15564001 (-) True AMCG00014492
AMCG00014485 mRNA downstream 248037 15370180 ~ 15371125 (-) True AMCG00014485
AMCG00014484 mRNA downstream 256232 15350804 ~ 15362930 (-) True AMCG00014484
AMCG00014483 mRNA downstream 270689 15336207 ~ 15348473 (-) True AMCG00014483
AMCG00014499 mRNA upstream 45918 15673026 ~ 15676127 (-) True AMCG00014499
AMCG00014498 mRNA upstream 52687 15679795 ~ 15697711 (-) True AMCG00014498
AMCG00014497 mRNA upstream 122226 15749334 ~ 15751165 (-) True AMCG00014497
AMCG00014511 mRNA upstream 346245 15973353 ~ 15993156 (-) True AMCG00014511
AMCG00014510 mRNA upstream 414125 16041233 ~ 16067562 (-) True AMCG00014510
TU87063 other downstream 3956669 11660021 ~ 11662493 (-) False AMCG00014374
TU86854 other downstream 4821015 10796716 ~ 10798147 (-) True G69537
TU86630 other downstream 6301995 9310451 ~ 9317167 (-) True AMCG00014328
TU86412 other downstream 7234938 8383285 ~ 8384224 (-) True G69156
TU86302 other downstream 7460572 8156229 ~ 8158590 (-) True AMCG00014298
TU90285 other upstream 12702631 28329739 ~ 28332482 (-) True G72236
TU90581 other upstream 13762182 29389290 ~ 29398305 (-) True G72477
TU91283 other upstream 16636059 32263167 ~ 32263427 (-) True G73047
TU91373 other upstream 16970354 32597462 ~ 32614806 (-) True G73127
TU91374 other upstream 16970354 32597462 ~ 32619149 (-) False G73127

Expression Profile